Gene Swoo_4589 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSwoo_4589 
Symbol 
ID6118955 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella woodyi ATCC 51908 
KingdomBacteria 
Replicon accessionNC_010506 
Strand
Start bp5562136 
End bp5562816 
Gene Length681 bp 
Protein Length226 aa 
Translation table11 
GC content46% 
IMG OID641636160 
ProductTPR repeat-containing protein 
Protein accessionYP_001762934 
Protein GI170728908 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value1.95953e-08 
Fosmid HitchhikerNo 
Fosmid clonabilityunclonable 
 

Sequence

Gene sequence
ATGAAAACAT CTATTATTAT CGCTAGCATC GCCCTACTAC CAAGTCTGAC TCACGCTAAT 
GAGATCCCAG CTATCGATAC AGCTTCAAAC ACCATGAATG TTGCAGCGCT GCAAAATCTC
AGTCAGCAGA CACAAAACTA TGACAGAGCT TATGCAAACT ATCGGTTAGC CATTACTGCT
AACATTCTCG GTCAAAGTGA AACTGCTATA AACGCACTAA CATCAGCACA AGCAACACTG
GAGAACTTGG ACCAAGCTGA TGCTGAGAAC TTAGCCCTTC TCGCCTCTGT CTACGGCATG
CAGATAGCAT TAGATAACTC TCAAAGCGCC CATTTAGGCC CTAAAATTGG GCAGATGCTT
GCACAAGCTC AGTTACTGGA TCCTACCAAC CCTCGTGTTG TACTAGTGCA GGCGATATCC
GCCTTCAACA CACCGATTAG TTTTGGTGGT AGTATGAAAA AAGCAATGGA ATTAAGCAGT
AAAGCTATAG CACTTTATGA GGTACCCTGT GATGAGATCT GTTGGGGCCA CGCCGAAGCT
TACACTTGGC GTGGACTAGC AAAACAGAGC ACTGGAGATA GCCAAGGCGC GATCGCCGAT
TGGCAAGCGG CAATTGAGGT ACAAGCTGAT TACGGCTGGG CAAACTTTTT ACTTAAACAA
AATCAAATCG CCGCCAATTA A
 
Protein sequence
MKTSIIIASI ALLPSLTHAN EIPAIDTASN TMNVAALQNL SQQTQNYDRA YANYRLAITA 
NILGQSETAI NALTSAQATL ENLDQADAEN LALLASVYGM QIALDNSQSA HLGPKIGQML
AQAQLLDPTN PRVVLVQAIS AFNTPISFGG SMKKAMELSS KAIALYEVPC DEICWGHAEA
YTWRGLAKQS TGDSQGAIAD WQAAIEVQAD YGWANFLLKQ NQIAAN