Gene Swoo_4583 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSwoo_4583 
Symbol 
ID6118949 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella woodyi ATCC 51908 
KingdomBacteria 
Replicon accessionNC_010506 
Strand
Start bp5553763 
End bp5555874 
Gene Length2112 bp 
Protein Length703 aa 
Translation table11 
GC content48% 
IMG OID641636154 
Productbifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase 
Protein accessionYP_001762928 
Protein GI170728902 
COG category[K] Transcription
[T] Signal transduction mechanisms 
COG ID[COG0317] Guanosine polyphosphate pyrophosphohydrolases/synthetases 
TIGRFAM ID[TIGR00691] (p)ppGpp synthetase, RelA/SpoT family 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00343427 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.000000056206 
Fosmid HitchhikerNo 
Fosmid clonabilityunclonable 
 

Sequence

Gene sequence
TTGTATCTGT TTGAAGGTCT CAAGGAGTCT GCATCAGGGT ATTTAGAACC TGATCAGGTA 
GAATTACTCA AGCAGGCCTA TCAGGTGGCG CGTGATGCCC ATGAAGGTCA AATGCGCACA
AGTGGTGAAC CTTATATCAC ACACCCGGTT GCGGTCGCCC GCATTCTGGC CGATATGCGT
CTCGATCATG AGACGCTTAT GGCTGCTCTC CTGCACGACA CCATCGAAGA CACCCCTGTC
ACCAAAGAGG AGCTGGCTGA GTTATTCAGT GAATCTATTG CCGAACTGGT TGAGGGCGTC
TCAAAACTCG ATAAGCTAAA ATTCCGCGAT AAGAAAGAGG CCCAGGCCGA AAACTTCCGC
AAAATGATGA TGGCCATGAC CCAAGATATT CGGGTTATCC TTATCAAACT AGCCGATCGT
ACCCACAATA TGCGCACCCT TGGGGCTTTA AGGCCTGACA AGCGTCGTCG TATAGCGCGG
GAAACCTTAG AAATCTATGC CCCGATTGCC AACCGTCTCG GTATTCATAA CATCAAGACC
GAGCTCGAAG ATCTTGGCTT CCAAGCCTAC TACCCAATGC GTTATCGCGT ACTTAAAGAG
GTAGTTAAGG CCGCACGTGG CAATCGTAAA GAGCTCATTC AAAGTATTGA AGCTGCAGTT
CACACTCGCC TCGAAGACAC TAAGATCCCA GGTACAGTGA AAGGCCGAGA GAAAAACCTC
TACTCCATCT ATAACAAGAT GTGCAGTAAG GAGCTTCAGT TCCAAGAGGT CATGGATATC
TACGCGTTTC GCGTCATAGT GGACTCCATC GATACCTGCT ACCGAGTCTT AGGTGCAATG
CATGCCCTAT ACAAGCCTCG TCCAGGTCGA TTTAAAGATT ATATTGCTAT CCCTAAAGCC
AATGGCTATC AGTCACTCCA TACGTCACTG TTTGGTCCTC ACGGCGTTCC TGTTGAGATC
CAGATCCGTA CCGAAGATAT GGATCAGATG GCAGATAAAG GGGTTGCAGC GCACTGGATC
TACAAAAAAG GCAGCTCAGC TGAGCAAGGC ACAACGACAC AAGTTCGTGC ACGTAAGTGG
ATGCAGAGCC TGCTTGAATT ACAACAAAGC GCCAGCACCT CATTTGAGTT TGTTGAAAAC
TTTAAGACAG AGCTTTTCCC AGAAGAGATC TACGTATTCA CCCCTGAGGG TCGAATTTTA
GAGCTTCCTG TTGGCGCAAC ACCCGTCGAT TTTGCTTACG AAGTGCATAC CGATGTGGGT
AATACCTGTG TTGGCGCACG AGTCAATCGT CAAGCATACC CGCTAAGCCA ACCTCTGATT
TCAGGCCAAA CCGTTGAAAT TATTACGGCT AAAGGCGCCC GCCCTAATGC GGCATGGCTA
AACTTTGTGG TCACAGGTAA GGCTCGCGCT AAGATACGTC AACTGCTGAA AAGTTTAAAA
GAGGATGACG CAGTCATCTT AGGTAAACGC CTACTGAATC ATGCGCTAGG TGATACCAAA
CTAGATATGA TCACACCCGA GCAGATTGAG AAAGTTGTCA GTGACACCAA GCACGACACC
CTCGAAGAGC TACTGGTCGA TATCGGTTTA GGTAATGCCA TGAGCATAGT CATTGCCCAA
CGACTTAAAG GCGATCAGGA ACAGATCGAG CCCCATGAGC ATAAAGAATC TAACATGATG
CCGATCCGCG GTGCAGAGGG GATGTTAGTC ACATTCGCCA ACTGCTGCCG ACCAATCCCA
GGTGATGCAG TCATCGCCCA TGTGAGTCCA GGTAAAGGCT TGGTTGTTCA TATGGAGAGC
TGCGCGAATA TCCGTGGCTA TCAAGGTGAG CCTGATAAAT ATATTCCTGT GCAGTGGGAT
AACGCCGAAG GTGTTGAGTT CCAAGCTAAC TTACGAGTTG AGATTGTGAA CCATCAAGGT
GCTCTGGCCA AGATCACCTC GATTGTAGCT GCTGAAGGTG CCAATATTCA TAACCTAAGC
ACAGAGGAGC GAGACGGCAG AGTCTTCCTC ATCAATTTAC GAATCTCGGT CACTGATCGA
ATTCATTTAG CCAACGTGAT GCGCCGTATC AGGGTACTAC CTGAAGTATT ACGTACATCC
CGTAATCGAT AA
 
Protein sequence
MYLFEGLKES ASGYLEPDQV ELLKQAYQVA RDAHEGQMRT SGEPYITHPV AVARILADMR 
LDHETLMAAL LHDTIEDTPV TKEELAELFS ESIAELVEGV SKLDKLKFRD KKEAQAENFR
KMMMAMTQDI RVILIKLADR THNMRTLGAL RPDKRRRIAR ETLEIYAPIA NRLGIHNIKT
ELEDLGFQAY YPMRYRVLKE VVKAARGNRK ELIQSIEAAV HTRLEDTKIP GTVKGREKNL
YSIYNKMCSK ELQFQEVMDI YAFRVIVDSI DTCYRVLGAM HALYKPRPGR FKDYIAIPKA
NGYQSLHTSL FGPHGVPVEI QIRTEDMDQM ADKGVAAHWI YKKGSSAEQG TTTQVRARKW
MQSLLELQQS ASTSFEFVEN FKTELFPEEI YVFTPEGRIL ELPVGATPVD FAYEVHTDVG
NTCVGARVNR QAYPLSQPLI SGQTVEIITA KGARPNAAWL NFVVTGKARA KIRQLLKSLK
EDDAVILGKR LLNHALGDTK LDMITPEQIE KVVSDTKHDT LEELLVDIGL GNAMSIVIAQ
RLKGDQEQIE PHEHKESNMM PIRGAEGMLV TFANCCRPIP GDAVIAHVSP GKGLVVHMES
CANIRGYQGE PDKYIPVQWD NAEGVEFQAN LRVEIVNHQG ALAKITSIVA AEGANIHNLS
TEERDGRVFL INLRISVTDR IHLANVMRRI RVLPEVLRTS RNR