| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_4546 |
|---|
| Symbol | |
|---|
| ID | 6118912 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella woodyi ATCC 51908 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010506 |
|---|
| Strand | - |
|---|
| Start bp | 5511111 |
|---|
| End bp | 5512409 |
|---|
| Gene Length | 1299 bp |
|---|
| Protein Length | 432 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 641636117 |
|---|
| Product | aromatic hydrocarbon degradation membrane protein |
|---|
| Protein accession | YP_001762891 |
|---|
| Protein GI | 170728865 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG2067] Long-chain fatty acid transport protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.495383 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.0136159 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATAAGC GCATTTTATC TGTGGCTGTG ATTGCAGCAA TCATGGGAAC AACGACTCAA
GTTCAAGCGG CTGGTTTTCA ATTAGCTGAA TACTCTGCAA CAGGATTAGG CCGTGCCTAC
GCCGGTGAAG CTGCTATGGC CGATAACGCG GCTGCACAAT TTCGTAACCC AGCCATGCTC
ACCTACCTTC AAGGTACTCA AATGACCACT GGTGCGATTT TGGTTATGCC AAATATCGAT
GTTGATGGTG AAGTGACCTA TGTCGACGGT AAAAACCCAA CATCGGCAAA GGACATTGCT
GGTGATGCGG TTGTTCCCAA TTTTTATGTA TCACATCAGT TAAATGAGCA ATGGTTCTTA
GGTGTTGCCT TAGGAAGCAA CTTTGGTATG GCGACAGAGC TTGATGATAG CTTTCGCGGC
AACCAATTTG GTAATGAAGC TTCGGTGACA ACAGTAGAGC TTAACCCTAA TATTGCATAC
CGTATCAATG ACCAGTTTAG TATCGGTGCT GGCGTTCGCT TTGTGATGGG TGAAGGCAGC
TTCGGTGCCA AGAGCTCTGT TGATGTTCCA TTATCTGCAA GTCTCATTAT TCCTAAGGGA
ACCACTCTAA AGTACATGGA AGGGGATGAT ACCTCTTGGG GATGGCAGCT AGGTGGTGCA
TGGCAGATCA ATGCTAATAA CCGTATTGGC TTTAACTATC GTTCTGAGGT TGAGCAAAAC
TTGGAAGGTG AAGCGAATGG CCTAGGTTTT AGCATGCTTG AAGGTAGCAT GAACGCGAGT
AAAATCTATG CGGGTGCAAT GGAGCTTACG CTCCCAGCCA CAGCTGAGAT TGCCAGTTTC
CACCAATTAA CGGATAAGCT TGCTGTTCAT GCCAGCGTGA ACTGGACTGA CTGGAGCTCA
TTCGAAAAGC TTGAAGCTAA AATTCCTGAG CTAAGTAACT CTGCTATTTT GGTTAAAGAG
GAAAACTGGA AAGATAACTA CCGTTTTGCA CTTGGTGCGA CTTATGAGTT GTCTGCAAAA
TCAAGCCTAA GAGCTGGTGT TGCCTATGAT CAGGCCGCGG TTGATGATAT TCACCGTACG
GCGACCATTC CTGAAGTTAA CCGTCTTTGG TTGAGTGCTG GTTATGGATA CCAATATAGC
GAAAATTTAG CGTTTGATTT CGGGGCAACT TACATCTTTG CTGATGAGTC TCCAATGCAT
GAGGCTGACA CTGATTCACT GCCGTTTGGT GGAGCGTTTG AGGGGCAAGT TAGTGGTAAT
ATTATGCTAG TGGGTGTGCA GGCTAGCTAC CGTTTCTAA
|
|---|
| Protein sequence | MNKRILSVAV IAAIMGTTTQ VQAAGFQLAE YSATGLGRAY AGEAAMADNA AAQFRNPAML
TYLQGTQMTT GAILVMPNID VDGEVTYVDG KNPTSAKDIA GDAVVPNFYV SHQLNEQWFL
GVALGSNFGM ATELDDSFRG NQFGNEASVT TVELNPNIAY RINDQFSIGA GVRFVMGEGS
FGAKSSVDVP LSASLIIPKG TTLKYMEGDD TSWGWQLGGA WQINANNRIG FNYRSEVEQN
LEGEANGLGF SMLEGSMNAS KIYAGAMELT LPATAEIASF HQLTDKLAVH ASVNWTDWSS
FEKLEAKIPE LSNSAILVKE ENWKDNYRFA LGATYELSAK SSLRAGVAYD QAAVDDIHRT
ATIPEVNRLW LSAGYGYQYS ENLAFDFGAT YIFADESPMH EADTDSLPFG GAFEGQVSGN
IMLVGVQASY RF
|
|---|
| |