| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_4535 |
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| Symbol | murD |
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| ID | 6118901 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | - |
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| Start bp | 5499046 |
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| End bp | 5500374 |
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| Gene Length | 1329 bp |
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| Protein Length | 442 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 641636106 |
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| Product | UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase |
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| Protein accession | YP_001762880 |
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| Protein GI | 170728854 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0771] UDP-N-acetylmuramoylalanine-D-glutamate ligase |
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| TIGRFAM ID | [TIGR01087] UDP-N-acetylmuramoylalanine--D-glutamate ligase |
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Plasmid Coverage information |
| Num covering plasmid clones | 28 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.00240121 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGAAAATA TTAAGTCACA TGTAGTTTTA GGGCTGGGAG CAACTGGGCT TTCGGTTGTG
CACTATCTGC ATGAGCAGGG GATCACTCCT TTGGTGATGG ATAGCCGTCA TCAACCTCCA
GGCATGGATG AACTCAAGCG TTTATATCCA GAGGTTGAGT TGCTGACTGG CGGTTTTGAT
TGTCGTTATC TCGTGCAAGC CAGTCAAATT ATTATCAGTC CTGGTATTGC CGTTGATACG
CCTGAGATCC GTGCGGCTAT CGATATGGGT ATTGAAGTTA TTGGGGATGT GGAGTTATTT
GCCCGAGCGG TTAAGGATAG AGAGCCCTGT GTAATAGGTA TTACCGGTTC AAATGGTAAG
TCTACAGTGA CCACATTAGT TGGTGAGATG GCGAGGGTAG CAGGTCTCAA CTATGCAGTT
GGTGGCAATA TCGGTGTTCC CGCACTCGAT CTGCTTAGAG AGCCAAGAGA TCTCTATATT
CTAGAACTCT CTAGTTTCCA GCTCGAGACT ACGCACAGTT TAAATTGCAT CGTGGCGACC
TGTCTCAATA TTAGTGAAGA TCATATGGAT CGTTACACAG ATCTTGAGGC TTACAGGCAA
GCAAAACTGT CACTCTATTG CCAAAGTAAA CGTGCGCTGT TTAATCGAGA AGATGAACTG
ACCGAGCCAA AAGATCCGAT GAATCAAAAT AGTTTTGGAT TGTCGGCACC ATTTAATGAT
GAGTGGGGTG TTCGTGATGG CAAGGTTGTG CATGGAACAA CAGAGATCAT GAACCTGCTT
GATGTTGCGC TTGTTGGTAG CCATAACCAT GCTAATCTGC TTGCCGCTAT GGCACTGGCT
TATCATGCCG GAGTCGATAA AGAATCGATG ATACAGGTTG CGACGACCTT TACTGGTTTA
GCACATCGAT GTGAATTGGT GGCTGTTCAT AATGGCGTCA GTTATGTCAA CGACTCTAAG
GCTACTAATG TCGGCGCAAC TGTTGCTGCA CTTGAAGGGT TTAGTGATCA TCTTGGTGGC
ATTATTTTAA TTGCGGGTGG AGATGGAAAA GGCGCTGATT TTCAGCCATT GCAGCAGGCT
ATTCATGGGC TTTCTCAACT GATCACATTA GGAAAAGATG GCGATAAAAT TGCTGAGTTT
TCTGAGAAAG CTATCCGAGT TAGCGATATG TCTGAGGCGG TAAAAACAGC GAATGAACTT
GCCGAGGCTG GAGATATTGT ATTGATGTCG CCTGCTTGTG CGAGCTTAGA TATGTACAAA
AACTTTATGG CTCGTGGCGA AGATTTCAGA GCAGAGGTGA ATGCATTAGC TGGAAGCTCT
GATGCGTAG
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| Protein sequence | MENIKSHVVL GLGATGLSVV HYLHEQGITP LVMDSRHQPP GMDELKRLYP EVELLTGGFD
CRYLVQASQI IISPGIAVDT PEIRAAIDMG IEVIGDVELF ARAVKDREPC VIGITGSNGK
STVTTLVGEM ARVAGLNYAV GGNIGVPALD LLREPRDLYI LELSSFQLET THSLNCIVAT
CLNISEDHMD RYTDLEAYRQ AKLSLYCQSK RALFNREDEL TEPKDPMNQN SFGLSAPFND
EWGVRDGKVV HGTTEIMNLL DVALVGSHNH ANLLAAMALA YHAGVDKESM IQVATTFTGL
AHRCELVAVH NGVSYVNDSK ATNVGATVAA LEGFSDHLGG IILIAGGDGK GADFQPLQQA
IHGLSQLITL GKDGDKIAEF SEKAIRVSDM SEAVKTANEL AEAGDIVLMS PACASLDMYK
NFMARGEDFR AEVNALAGSS DA
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