| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_4521 |
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| Symbol | |
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| ID | 6118877 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | + |
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| Start bp | 5469384 |
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| End bp | 5470439 |
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| Gene Length | 1056 bp |
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| Protein Length | 351 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 641636083 |
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| Product | secretion protein HlyD family protein |
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| Protein accession | YP_001762867 |
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| Protein GI | 170728841 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1566] Multidrug resistance efflux pump |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.170966 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCCAAGA GTAAATTATA TATTGTAGTC CCACTCATCC TTGCCCTTTT AATCAGTGGC
GGCTACTACT GGTGGACCCA AGTACGCTTT ATCGAGTCTA CAGATAATGC CTATGTTGAG
GCCGACATCT CCCATATCAG TGTGAAGGTT CCTGGCTACG TTGTGATGAC AGACATTACT
GATAATCAGC ATGTTGAAGT GGGACAACTG CTGGCACAAC TAGAAGATAA TCAGTATGAG
GCCAAAGTAG CACAGAGCCA AGCAGCACTG GAAAGTGTCA AAGCAGAACA GCAAACATTG
GCAGCCAAAG TCACATTGCA AGATGCGCTT ATTAATCAAG CTGCCGCAGG TGTAAAAGCC
GCTGAGTCAG ATCATTTACG CGCCGAACAA CAGCTAAATC GCACCGTTCA ATTAAAGGTG
AAAAATTACA GTTCACAGGA TGATGTCGAT CAGATGCAGG CAAGCTTTGA ATCCGCTATC
GCCCATCTTG ATGAAGCTAA GGCAGCCTTA ATTGCTAAGC AGCGAGAGCT GGCAGTATTT
AAAGCCCAAT TACAGCAAGT TGATGCAAAT GTAGTACAGG CTAGGGCAGG TCTTAAGCTT
GCCGAGATAC AGCTCTCGGA TACTCAAGTG CGCGCGCCAT TTTCAGGGAT CATCGGCAAA
CGTGGTGCGA TGAAAGGCCA ATATGTTCAG CCAGGTCAAG CCCTCTATAG TTTGGTACCG
GATGGTGCAG TGTGGATCAC GGCAAACTTT AAAGAAACCC AAATCCAACA TATGCAAGCT
GGTCAACAGG TGAAAGTCAC TCTCGATGCG TTTCCCGACA AAGCCTTTAC AGGTGTTATC
GACAGTCTCT CCCCAGCTTC CGGTGCCAAA TTTAGTTTAT TGCCCGCAGA AAATGCGACT
GGAAACTTCA CTAAGATAGT TCAGAGAATT CCAGTAAGGA TCCGCTTAGC AGCCAACCAA
GAGATGAGAA TTGTTCCAGG GTTAAGCGCT GTGGTTGAGG TAGATACCCA TGAAGCGTCC
ATAAATTACG CCATTGCTGC TAACGCAGGT TATTAA
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| Protein sequence | MSKSKLYIVV PLILALLISG GYYWWTQVRF IESTDNAYVE ADISHISVKV PGYVVMTDIT
DNQHVEVGQL LAQLEDNQYE AKVAQSQAAL ESVKAEQQTL AAKVTLQDAL INQAAAGVKA
AESDHLRAEQ QLNRTVQLKV KNYSSQDDVD QMQASFESAI AHLDEAKAAL IAKQRELAVF
KAQLQQVDAN VVQARAGLKL AEIQLSDTQV RAPFSGIIGK RGAMKGQYVQ PGQALYSLVP
DGAVWITANF KETQIQHMQA GQQVKVTLDA FPDKAFTGVI DSLSPASGAK FSLLPAENAT
GNFTKIVQRI PVRIRLAANQ EMRIVPGLSA VVEVDTHEAS INYAIAANAG Y
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