Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swoo_4517 |
Symbol | |
ID | 6118873 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella woodyi ATCC 51908 |
Kingdom | Bacteria |
Replicon accession | NC_010506 |
Strand | + |
Start bp | 5463272 |
End bp | 5465200 |
Gene Length | 1929 bp |
Protein Length | 642 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 641636079 |
Product | hypothetical protein |
Protein accession | YP_001762863 |
Protein GI | 170728837 |
COG category | |
COG ID | |
TIGRFAM ID | [TIGR03507] decaheme c-type cytochrome, OmcA/MtrC family |
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Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 13 |
Fosmid unclonability p-value | 0.247929 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAAGTGT TAAATAAGCG TTATTTAGCC TTAATTGTAG CGGCGGCTAT GGGTGTGAGC GCCTGTGGCA GTGACGGCAA AGATGGTGCA GATGGCGAAG ATGGTGCACC AGGACCTGGT CCAAATCCAC CAACAGTAGA AGCCTCAGAA ATCACTAACG TTGAAGTAAT CAATCACGTG ATTGAAGAAG GTAAAGTGAC CTTTGAGTTC CAAATCACTA ACGAAGATGA TGCCTTGATT GTTGGCTTAC AAAAAGCCAA TGCTGAACTG TCTGCAATGA CTGAAAATGG TATTGCCCGT AGCCGCGATA GCTATGAAGG CGTTCAAGTG GGTGGCAGTG CCAGTGAAAC AACTGAAGGC GCTAGCTTAA CGGTACTTGA CAATGGCAAC TATGAATTTG TTGCACCAAT GCCACATGTT ACAGCAGGCA CTGACGGTAT TGTCCGCTTA GCTGTTGGTG GCGGTGATGC CATTGCTAAG TCACGCTACA TTATTGTGAG CAAACCTGAC AATGTGCACA CCACTACCAC TGAGACTTGC CAAAGTTGTC ACGTAGATTA CGCAGCATCT CACCTTAAGC ACCCAAGCTA TACAGCGATC AACACTGACG GGGAAACCGA CCTTGTTGCG GGCTGTATGA CATGTCACGG CAACGTTGCT CGTGATGATG GTGGTTATGC ACGTAACACT ATGCAAAAGA TTGGTCATAT CAATCACCAG AAGTTTGAAA AAGACTTTGC TCCGACTAAC TGTTATACCT GTCACGCAGA GCCAGTGATT AACACTAGCA TTGCCGGTAA TGGTTGTAGC GATTGTCACT CAACGGATAA TGCAGACATA CAAGCAATTA TAGCTTCAAG CAACGAATTC GATGCGCGTG CATTCCACGC TAATTCGGCA TTGATTGGCC TTGAAGAGCG TCAAAATATC CGTGCAAATC ATTACACCAC AACTTCAGCG CCGTATATCG ATGATTCATT GGTGTGGGAT AACTATCCAC AAGGTGGCTG GTGTACGACT GTGGCACTAT TTAATACCGA AGGCGAATCA GAAGTTCAGT TAAACATTGG ACAGATGTAC GCGGCAGGGA CATTGACTTA CGCTGGGGCT TATATCCACG GTCACTTTAA TGATTCATTA GTTGGTCGTC CTAGCCCACG AGGCTCAGAT CAGTATATTG AAAATGAAGA TGGCAGCCGC TCTATTTGTT ACCCTCACCT AGACGGCCTA GACTCTAGCT ACCGTTTAGC TGATCTGGTT GCGAGTACTC GTGTTACTTT CAAGCAGTTT GAAGATGATG GCGGTTATGA CGGTGTTTCT TTCACCAGTT ACTCAGATGT TGTAGATCAT ACTGGCGTGA AAACCCAGGA GTATGAACGT CGTCATGCTG TGACTACTGA TAGTTGTACA ACTTGTCACA ATAACGAAAC TAACTACCAC AAAAACGGTA GCTATACCGA AGGTGGTCTA GATTGTGTTG CTTGTCATAA CAATGGCCAA GATCGTAGCG CCAAAAACTC AGCTCCAGGC TTTGGACCTA TGGTTCACAG TATGCATTGG GGTGTAGGTG CTTCTGCAAC CGATCCAGAT GGTAACCCTA ATTCAGCCAC TAAGCTTAAC GCTGAAAACT GTGTATCTTG TCATGCTGAC GGCATCGACT TGAATGCGAT TCCAAATCAG TTTATCCGTG CAAAAGCGTT CCACGGTGGT GACAACACTA AGATGGCTAG CCCAATTACG GCTAACTGTT TTGCATGTCA CAATGATGAT TCAGCACTGA ATCATATGAT TCAGCAAGGT GGTTCAATTG ATGAAGAAGT GGTAGCCGAT TGGTATACTC AACCAACTTC AGAGTCTTGT GCAACTTGTC ACGCCGAAGG CAAATCTTAC GGCATCGAGA AGTTCCACAT TTTTGAGCGT TCATTTTAA
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Protein sequence | MKVLNKRYLA LIVAAAMGVS ACGSDGKDGA DGEDGAPGPG PNPPTVEASE ITNVEVINHV IEEGKVTFEF QITNEDDALI VGLQKANAEL SAMTENGIAR SRDSYEGVQV GGSASETTEG ASLTVLDNGN YEFVAPMPHV TAGTDGIVRL AVGGGDAIAK SRYIIVSKPD NVHTTTTETC QSCHVDYAAS HLKHPSYTAI NTDGETDLVA GCMTCHGNVA RDDGGYARNT MQKIGHINHQ KFEKDFAPTN CYTCHAEPVI NTSIAGNGCS DCHSTDNADI QAIIASSNEF DARAFHANSA LIGLEERQNI RANHYTTTSA PYIDDSLVWD NYPQGGWCTT VALFNTEGES EVQLNIGQMY AAGTLTYAGA YIHGHFNDSL VGRPSPRGSD QYIENEDGSR SICYPHLDGL DSSYRLADLV ASTRVTFKQF EDDGGYDGVS FTSYSDVVDH TGVKTQEYER RHAVTTDSCT TCHNNETNYH KNGSYTEGGL DCVACHNNGQ DRSAKNSAPG FGPMVHSMHW GVGASATDPD GNPNSATKLN AENCVSCHAD GIDLNAIPNQ FIRAKAFHGG DNTKMASPIT ANCFACHNDD SALNHMIQQG GSIDEEVVAD WYTQPTSESC ATCHAEGKSY GIEKFHIFER SF
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