| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_4484 |
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| Symbol | |
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| ID | 6118840 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | - |
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| Start bp | 5421622 |
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| End bp | 5423172 |
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| Gene Length | 1551 bp |
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| Protein Length | 516 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 641636046 |
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| Product | amino acid/peptide transporter |
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| Protein accession | YP_001762830 |
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| Protein GI | 170728804 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG3104] Dipeptide/tripeptide permease |
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| TIGRFAM ID | [TIGR00924] amino acid/peptide transporter (Peptide:H+ symporter), bacterial |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.0470977 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 32 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGAAACCA GGGTGGAATT AACCGAAGCA GATACGGTGG ACCAGACCTT AGGAGAGGCA
AACTTAGCCC ACCCTAAGGG GCTTTATGTG TGCTTTTTTA CCGAGATGTG GGAGCGCTTT
AGTTTTTATG GCTTAAAGGC TCTGCTTATC TTCTATCTGA CAGATCACTT CCTGTTTAGT
GATCTTGAAG CGGCCAATAT ATTCGGTAAC TACTTCGCGC TGGTTTACGC CTTGCCTTTA
GTGGGTGGAG TGCTGGCGGA TCGGTACCTG GGTGGTAAGC GAGCGGTGAC CTTTGGCGCC
ATCTTGCTCT GTCTAGGCCA CTTCGGTATG GCTTTTGAGG GGCAAGCTGC TTATATCGAT
GATCTAGGTA ACAAAGTCGA GAGTACTGGA TTATCGATGT TTTACCTGTC GCTCTCTTTC
ATCATAGTGG GAGTTGGCTT CTTAAAACCT AACATCTCGA CCATAGTGGG TAAGCTTTAT
GATAGAAACG ATCCTAGAAA AGATGCCGGA TTTACTCTGT TTTATATGGG TATTAATATC
GGCGCTGCGC TCTCTTCTAT TGTGTGCGGT TATGTAGGCA CTCAGTATGG ATGGTCATAC
GGTTTTGGCT TAGCAGGCTT TGGTATGTTA CTGGGGCTAG TGGTTTTTCT TGGAGGTCAG
AAGCACCTTA AGGGCTTTGC TGAAACGCCT GACAAGCAGA TGTTGACCGA ATCACTTTGG
TGGCGTTTTA CCCGAGAGCA CCTTATCTAT GCTTTTGCCA TTGTGATGGT TATGCTGGTG
GCCTTGGTGA TTGGCGATCA TCAGGTGGTG GGCGGCTTGC TAGGTTTTAG TTTTGTGGCT
ATCGCTGTAT GGCTGGTTTG GTACTGCATC CAAGAGGTTT CACTTGAGGT GAGGCAGAAA
CTCTATGCTG CAGTTAGCCT AGTGATGATG TCGACGGTTT TCTTTCTCTG TTTTTTGCAA
TCGGGAAGCT CAATGAACCT GTTCGCCGAT CGCGTTACCG ATAGGGTGTT ATTTGGGGTT
GAGATCCCAG CGCCCATGTT CCAGTCACTC AATGCGATCT TTATTATTTT ACTGGCGCCA
TTATTTGCTA AAAGCTGGCA GTGGATGATT CAAAAAGGAG TAGCCCCAAG TACGCCGATG
AAGTTTGCCT TAGGCTTGCT ACAGGTGGGA TTAGGATTCT TAGCTTTGGT TATGGGGCTG
GCGTTTTCTA AAGGTGATCA GCAGGTTGCT ATGGGTTGGT TAGTACTTGC TTACTTATTG
CACACAACGG GGGAGTTATG TATCTCTCCC ATTGGCTTGT CGATGATAAC TAAACTATCG
GCGGGTAAAA TAGTTGGCTT GATGATGGGG TTGTGGTTTT TAGGCTCGGC AATTGCTGAG
TATATCGCAG CCCTTCTTGC GGGAAACAGC TCGGCTGAGC AGCTGGGACT AACCCAACAC
CAAAGCTTTA CTCTGCTTTA TACCGATATC ATGTGGATCG CCTTTGCCGG AGCGGCGCTG
ACCTTAGTGT TAACGCCTCT GCTGAAACGT TGGATGTGGG ATGTGGATTA A
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| Protein sequence | METRVELTEA DTVDQTLGEA NLAHPKGLYV CFFTEMWERF SFYGLKALLI FYLTDHFLFS
DLEAANIFGN YFALVYALPL VGGVLADRYL GGKRAVTFGA ILLCLGHFGM AFEGQAAYID
DLGNKVESTG LSMFYLSLSF IIVGVGFLKP NISTIVGKLY DRNDPRKDAG FTLFYMGINI
GAALSSIVCG YVGTQYGWSY GFGLAGFGML LGLVVFLGGQ KHLKGFAETP DKQMLTESLW
WRFTREHLIY AFAIVMVMLV ALVIGDHQVV GGLLGFSFVA IAVWLVWYCI QEVSLEVRQK
LYAAVSLVMM STVFFLCFLQ SGSSMNLFAD RVTDRVLFGV EIPAPMFQSL NAIFIILLAP
LFAKSWQWMI QKGVAPSTPM KFALGLLQVG LGFLALVMGL AFSKGDQQVA MGWLVLAYLL
HTTGELCISP IGLSMITKLS AGKIVGLMMG LWFLGSAIAE YIAALLAGNS SAEQLGLTQH
QSFTLLYTDI MWIAFAGAAL TLVLTPLLKR WMWDVD
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