| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_4417 |
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| Symbol | |
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| ID | 6118772 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | - |
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| Start bp | 5351210 |
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| End bp | 5352898 |
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| Gene Length | 1689 bp |
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| Protein Length | 562 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 641635979 |
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| Product | pilus (MSHA type) biogenesis protein MshL |
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| Protein accession | YP_001762764 |
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| Protein GI | 170728738 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1450] Type II secretory pathway, component PulD |
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| TIGRFAM ID | [TIGR02519] pilus (MSHA type) biogenesis protein MshL |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 27 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACAGCGA TTAAAACAAT TACGCCTCTG TTAGCGTTTT TATTGGTAGC CTGTCAGTCC
TTCGACAGGC CTAAGCCAGT AGAGTCGAAA TCTGCCTTGA ATGATTCGAT AAAGGCTGAA
AAGAGTAAGA GTGCCACGCC ACCACCTATG ATGCCTGAAT CAGTTCAAAA TGAGTTGTCG
TCACAGGACC TATTATCGGG ATTAACGCCA CCTCAAAGAA CTGAACGTCG TTTTGATGTT
TCGGCAAAAG ATGTTGATGC TAAAGTATTT TTTCCTAGTT TAATTCAAGG TACTCCACTG
AGTGTCGCCG TGCATCCAGA TGTTACTGGA ACTATCTCTT TATCGTTAAA GGGGGTGACT
CTAAGTGAAG CATTGCAGGT TGTTGAGGAT ATTTACGGTT ATGAAGTCAG CCGAGAGAAG
CGTATTTTAC GTGTTTATCC CGCTGGAATG CGCACTGAAA CATTTCCGTT AAATTATCTA
CAGATGGAGC GTCAAGGGTT ATCGCTGACA TCAGTTAATT CTGGGCGTAT ATCTGATAAT
AACAATAGCA GCTCAAGTTC AGGTGGTAAC AGCAACAACA ATAATGGCAG TAGTCAGTCT
AACTCATCGA GTAACAACTC AAGCTCAAAT AGTAGTAATG ACACGACAAA CGGCACGTTT
ATCCGCTCAA AGACTAAGAC AGACTTCTGG GGAGAGCTGG AAGAAACACT AGTTTCGATT
GTTGGCAGTA CAGGTAACGG GCGTCAGGTT GTTATTACTC CACAAGCTGG GCTTGTCACC
ATTAGAGCGT TTCCAAATGA GTTGCGTCAG GTTCGAACGT TTTTGCAAAC AGCTGAGTCA
CACCTGCAAC GTCAAGTGAT ATTGGAAGCA AAGATTTTAG AGGTGACTCT ATCTGATGGT
TATCAACAGG GAATTGAGTG GCAAAATGTG CTTGGTCATG TTGGTGATAC CGATATCTCA
TTTGGGACTT CACCTTCAGG TAGTGGCTTA AGCGATTCAA TTACCAGCGC TATTGGTGGT
GTAACCTCCA TGAAAATCTC AGGCGCTGAT TTCACCACGA TGATCAATCT ACTCGATACT
CAAGGTGATG TGGATGTGCT CTCTAGCCCG AGAGTGACAG CGACAAATAA CCAAAAAGCA
GTGATTAAAG TGGGTAAAGA TGAGTATTTT GTTACCGATG TTTCATCTAC TACAGTCGCT
GGTACGACAC CTGTGACCTC CCCTGAAGTT GAGTTGACAC CTTTCTTCTC AGGTATTGCG
CTGGATGTAA CACCTCAAAT TGATGGTGAA GGGAACATTT TACTGCATAT TCACCCTTCA
GTTATCAATA TAAAAGAGCA GACGAAAACC ATTAAGATCT CAGGGAGTGA ATTAGAGCTG
CCTTTAGCCC AGAGCGATAT CCGTGAGTCA GATACTGTTA TTAAAGCGAA AACTGGTGAA
GTGGTTGTCA TCGGTGGGTT GATGAAGAGC GAGAATATTG ATCTGGTTTC GAAAGTGCCG
CTTCTCGGTG ACATTCCTCT TGTTGGAGAA CTATTTACTA ACCGATCTAA GTCACTACAG
AAAACCGAAC TTGTACTGCT ACTAAAGCCT ACAGTGGTAG AGGCAGACAC CTGGAAGCAG
GAGTTAAAGC GCTCTAAAGA GCTACTTGAT CGTTGGTATC CAGAAGATGA ACAAGAGCAA
GGGCAGTAA
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| Protein sequence | MTAIKTITPL LAFLLVACQS FDRPKPVESK SALNDSIKAE KSKSATPPPM MPESVQNELS
SQDLLSGLTP PQRTERRFDV SAKDVDAKVF FPSLIQGTPL SVAVHPDVTG TISLSLKGVT
LSEALQVVED IYGYEVSREK RILRVYPAGM RTETFPLNYL QMERQGLSLT SVNSGRISDN
NNSSSSSGGN SNNNNGSSQS NSSSNNSSSN SSNDTTNGTF IRSKTKTDFW GELEETLVSI
VGSTGNGRQV VITPQAGLVT IRAFPNELRQ VRTFLQTAES HLQRQVILEA KILEVTLSDG
YQQGIEWQNV LGHVGDTDIS FGTSPSGSGL SDSITSAIGG VTSMKISGAD FTTMINLLDT
QGDVDVLSSP RVTATNNQKA VIKVGKDEYF VTDVSSTTVA GTTPVTSPEV ELTPFFSGIA
LDVTPQIDGE GNILLHIHPS VINIKEQTKT IKISGSELEL PLAQSDIRES DTVIKAKTGE
VVVIGGLMKS ENIDLVSKVP LLGDIPLVGE LFTNRSKSLQ KTELVLLLKP TVVEADTWKQ
ELKRSKELLD RWYPEDEQEQ GQ
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