| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_4268 |
|---|
| Symbol | |
|---|
| ID | 6118623 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella woodyi ATCC 51908 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010506 |
|---|
| Strand | - |
|---|
| Start bp | 5172420 |
|---|
| End bp | 5173523 |
|---|
| Gene Length | 1104 bp |
|---|
| Protein Length | 367 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 641635834 |
|---|
| Product | AraC family transcriptional regulator |
|---|
| Protein accession | YP_001762619 |
|---|
| Protein GI | 170728593 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG2207] AraC-type DNA-binding domain-containing proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 30 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGTCGT TAATTTCAGA TAGGGTTAAT GGTCACTCCT CTCAAGGGGA GCTAGCGACT
TCATCAGCTA AGTACACTAC GATTGCTGCT TGGTCATTAG CCGTTGCTCG AACCTTAAGC
GCTTCAGGCA TTGAGCCTAA TCCAGTATTT GAAGCGGCGG GTTTGTCCCT GTCTCAGCTA
GAATCTGCAC CGGATTCTCG GGTCGCTATC GATCTTATGA CCCCTTTTTG GCGTGATATT
GAAGCGGTGA CTCAACTGCC CTCCTTTGGA CTGAAGGTCG GTCAGTACGC ATATCCAATG
CACTTTAGGG CATTAGGCCG TTTGATGATG ACCTCAGATA CACTCGCTCA GGCATTTGAG
CGCCTCCCCA GTTACTATGC TCTCATCAGC AATTCTGCAG CAATCAAGCT ACAGCGAACG
CCACAACTGA TTGGTTTTAC GATCACACCA CTCGATGGGG TTGAGATAAG CCACATGGCT
ATCGATGCTT TTTTTTCAAC CTTGATGCAT CACGGCGACT TGATGATTGG TGACTCCAGG
TTTATTCATA GTGTCGACTT GATGCGCACA GAGCCAAAGG ACTCCTCTGC TTGGAGAGAC
TGCTTTAAAG CTCCAGTTGC ATTTGATAGG CAGGAGAACT GCATGTGGAT GGATAGGGGC
ATGTTGGAGC GCTCCACGTT GATGGCAAAT CCTGAATTAG CGGCTGAAAA TGAGCATCAG
GTACGCCAAT ACTTAGATCA GATGCAGGCG TTGAGCTGGA GGGAGAAAAG CTATCAAGCG
ATACATGCCA TGTTAGTCAC CGGGGAGCCA ACTGCTGCTA AAGTGGCACA GCTCTACAAT
ATCAGCGAGC GCTCCCTTAG CCGTTATTTG AAGAAAGAGG AAACTAGCTT TAGGAGTCTA
CTACAGGATA AACGTAAGGA GTTGGCGCAT TACTATTTAG GGCAAAGCGA GTTGAGCGTG
ACCCAGTTGG CCGATAAATT AGGTTATACC TGTTTGAGCA ACTTTACCCG TGCATTCCAC
CTTTGGTATG GCATCAGCCC TAGTGAATAT CGGGCACAAC GCCTGTCATC ATCTACAGCC
GATAACGGCA AGGATACAGG TTAG
|
|---|
| Protein sequence | MKSLISDRVN GHSSQGELAT SSAKYTTIAA WSLAVARTLS ASGIEPNPVF EAAGLSLSQL
ESAPDSRVAI DLMTPFWRDI EAVTQLPSFG LKVGQYAYPM HFRALGRLMM TSDTLAQAFE
RLPSYYALIS NSAAIKLQRT PQLIGFTITP LDGVEISHMA IDAFFSTLMH HGDLMIGDSR
FIHSVDLMRT EPKDSSAWRD CFKAPVAFDR QENCMWMDRG MLERSTLMAN PELAAENEHQ
VRQYLDQMQA LSWREKSYQA IHAMLVTGEP TAAKVAQLYN ISERSLSRYL KKEETSFRSL
LQDKRKELAH YYLGQSELSV TQLADKLGYT CLSNFTRAFH LWYGISPSEY RAQRLSSSTA
DNGKDTG
|
|---|
| |