Gene Swoo_4233 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSwoo_4233 
Symbol 
ID6118588 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella woodyi ATCC 51908 
KingdomBacteria 
Replicon accessionNC_010506 
Strand
Start bp5135499 
End bp5136314 
Gene Length816 bp 
Protein Length271 aa 
Translation table11 
GC content47% 
IMG OID641635799 
ProductABC transporter related 
Protein accessionYP_001762584 
Protein GI170728558 
COG category[Q] Secondary metabolites biosynthesis, transport and catabolism 
COG ID[COG1127] ABC-type transport system involved in resistance to organic solvents, ATPase component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.36582 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.000301963 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGGATCATC AGGTGTTAGC TGAGCCAAAA CCTTTGGTTG AGATCCACAA TTTGGGTTTT 
AGTCGTGGTG AGCATGTAAT TTTTGACGAT ATCAGCCTGT CTATTCCAAG AGGGAAGGTG
ACGGCTATCA TGGGGCCAAG TGGTATTGGA AAGACCACCT TGCTCAAATT GATGGGCGGG
CAGCTGACGC CAGATATCGG GCATGTATTG TTTGATGGTG TCGATGTGCA TAAGTGTCGT
CGAGAGGAGC TGTTTACATT GCGTAAACGT ATGAGCATGC TGTTTCAAAG TGGGGCTCTG
TTTACCGATA TGAATGTCTT TGATAATGTC GCATTTGCAC TGCGGGAACA CTCAGGACTG
CCGGAAGAGA TCATCAAACG TATCGTATTA ATGAAACTAG AAGCGGTAGG TCTACGTGGC
ACTGCGAATA TGATGCCCAA CGAGTTATCA GGTGGTATGC AGCGACGTGC AGCACTGGCA
AGGGCGATAG CGCTTGAGCC TGAAATGGTG ATGTATGATG AACCTTTTGC AGGCCAAGAT
CCTATCTCTA TGGGGGTTCT GGTTAAACTG ATCCGTGAGT TATCAGAGGC GTTACAGTTG
ACCTCAGTTG TGATCTCCCA TGATGTGCAG GAGGTGCTTA GTATTGCCGA TTACGTTTAT
GTTATGGCAG ATAAGCGTGT GATTGCACAG GGAACTCCCG CAGAGCTTAA AGCCTCTGAT
ATGGCACAGT TAAAACAGTT TATTGGCGGT GAGCCGGATG GGCCTGTTCC TTTTCATTTT
CCTGCTGAAG ATTATCAAAA GGAGCTGATA GGCTAG
 
Protein sequence
MDHQVLAEPK PLVEIHNLGF SRGEHVIFDD ISLSIPRGKV TAIMGPSGIG KTTLLKLMGG 
QLTPDIGHVL FDGVDVHKCR REELFTLRKR MSMLFQSGAL FTDMNVFDNV AFALREHSGL
PEEIIKRIVL MKLEAVGLRG TANMMPNELS GGMQRRAALA RAIALEPEMV MYDEPFAGQD
PISMGVLVKL IRELSEALQL TSVVISHDVQ EVLSIADYVY VMADKRVIAQ GTPAELKASD
MAQLKQFIGG EPDGPVPFHF PAEDYQKELI G