Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swoo_4233 |
Symbol | |
ID | 6118588 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella woodyi ATCC 51908 |
Kingdom | Bacteria |
Replicon accession | NC_010506 |
Strand | - |
Start bp | 5135499 |
End bp | 5136314 |
Gene Length | 816 bp |
Protein Length | 271 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 641635799 |
Product | ABC transporter related |
Protein accession | YP_001762584 |
Protein GI | 170728558 |
COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
COG ID | [COG1127] ABC-type transport system involved in resistance to organic solvents, ATPase component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.36582 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 5 |
Fosmid unclonability p-value | 0.000301963 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGGATCATC AGGTGTTAGC TGAGCCAAAA CCTTTGGTTG AGATCCACAA TTTGGGTTTT AGTCGTGGTG AGCATGTAAT TTTTGACGAT ATCAGCCTGT CTATTCCAAG AGGGAAGGTG ACGGCTATCA TGGGGCCAAG TGGTATTGGA AAGACCACCT TGCTCAAATT GATGGGCGGG CAGCTGACGC CAGATATCGG GCATGTATTG TTTGATGGTG TCGATGTGCA TAAGTGTCGT CGAGAGGAGC TGTTTACATT GCGTAAACGT ATGAGCATGC TGTTTCAAAG TGGGGCTCTG TTTACCGATA TGAATGTCTT TGATAATGTC GCATTTGCAC TGCGGGAACA CTCAGGACTG CCGGAAGAGA TCATCAAACG TATCGTATTA ATGAAACTAG AAGCGGTAGG TCTACGTGGC ACTGCGAATA TGATGCCCAA CGAGTTATCA GGTGGTATGC AGCGACGTGC AGCACTGGCA AGGGCGATAG CGCTTGAGCC TGAAATGGTG ATGTATGATG AACCTTTTGC AGGCCAAGAT CCTATCTCTA TGGGGGTTCT GGTTAAACTG ATCCGTGAGT TATCAGAGGC GTTACAGTTG ACCTCAGTTG TGATCTCCCA TGATGTGCAG GAGGTGCTTA GTATTGCCGA TTACGTTTAT GTTATGGCAG ATAAGCGTGT GATTGCACAG GGAACTCCCG CAGAGCTTAA AGCCTCTGAT ATGGCACAGT TAAAACAGTT TATTGGCGGT GAGCCGGATG GGCCTGTTCC TTTTCATTTT CCTGCTGAAG ATTATCAAAA GGAGCTGATA GGCTAG
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Protein sequence | MDHQVLAEPK PLVEIHNLGF SRGEHVIFDD ISLSIPRGKV TAIMGPSGIG KTTLLKLMGG QLTPDIGHVL FDGVDVHKCR REELFTLRKR MSMLFQSGAL FTDMNVFDNV AFALREHSGL PEEIIKRIVL MKLEAVGLRG TANMMPNELS GGMQRRAALA RAIALEPEMV MYDEPFAGQD PISMGVLVKL IRELSEALQL TSVVISHDVQ EVLSIADYVY VMADKRVIAQ GTPAELKASD MAQLKQFIGG EPDGPVPFHF PAEDYQKELI G
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