Gene Swoo_4232 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSwoo_4232 
Symbol 
ID6118587 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella woodyi ATCC 51908 
KingdomBacteria 
Replicon accessionNC_010506 
Strand
Start bp5134654 
End bp5135436 
Gene Length783 bp 
Protein Length260 aa 
Translation table11 
GC content49% 
IMG OID641635798 
Producthypothetical protein 
Protein accessionYP_001762583 
Protein GI170728557 
COG category[Q] Secondary metabolites biosynthesis, transport and catabolism 
COG ID[COG0767] ABC-type transport system involved in resistance to organic solvents, permease component 
TIGRFAM ID[TIGR00056] conserved hypothetical integral membrane protein 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.212693 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.000290444 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGAACTTGC TAGATAGAGT TGCCAATTTG GGAAGAGCAG CAATTGAGCT GGTGATTGGA 
TTTGGAAGCG CAGGGTTAAT GTTGTGGGGG GCGATAGCCC GTAAACCTAG AGCCAAAGGT
TTTCCCCTGT TCGTTAAACA ACTGTACGTT GTCGGCGTGC AATCTATGGT GCTGATATTT
GTGTCGGGGC TTTTTATCGG CATGGTATTG GCGTTGCAAG GGTATAATAT TCTTGTGGGC
TTTGGCACCG AAGAGAGCTT AGGGCCCATG GTGGCGTTGA GTCTGCTGCG TGAGTTAGGG
CCTGTAGTGA CAGCCCTCTT GTTTGCTGGA AGAGCAGGTT CAGCATTGAC CGCTGAGATA
GGTTTGATGA AGAGCACTGA GCAGCTTTCC AGTCTTGAGA TGATGGCAAT AGATCCCTTA
AGACAGATCA TCGCCCCAAG GTTTTGGGCC GGGGTGGTAA GCCTTCCTCT GTTAGCCCTT
ATCTTCACTG CGGTGGGGAT ATATGGTGGT CATATCGTGG GTGTCGAGTG GAAGGGGATA
GACAGTGGTA GTTTCTGGTC TATTTTGCAG GCGTCTGTTG AGTGGCGACA AGATATTGTA
AATTGTTTAA TTAAAAGTTT AGTGTTTGCG GTGGTGGTGA CCTGGATTGC GCTATACCGC
GGTTATCAGG TGATCCCTAA TCCTGAAGGG ATCAGCAAGG CAACAACGCA AACCGTAGTT
CAGTCTAGTC TGGCTGTGTT AGCACTGGAC TTCCTGCTTA CCGCACTGAT GTTTGGTCGT
TAA
 
Protein sequence
MNLLDRVANL GRAAIELVIG FGSAGLMLWG AIARKPRAKG FPLFVKQLYV VGVQSMVLIF 
VSGLFIGMVL ALQGYNILVG FGTEESLGPM VALSLLRELG PVVTALLFAG RAGSALTAEI
GLMKSTEQLS SLEMMAIDPL RQIIAPRFWA GVVSLPLLAL IFTAVGIYGG HIVGVEWKGI
DSGSFWSILQ ASVEWRQDIV NCLIKSLVFA VVVTWIALYR GYQVIPNPEG ISKATTQTVV
QSSLAVLALD FLLTALMFGR