| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_4195 |
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| Symbol | tolC |
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| ID | 6118550 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | + |
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| Start bp | 5100924 |
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| End bp | 5102255 |
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| Gene Length | 1332 bp |
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| Protein Length | 443 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 641635761 |
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| Product | outer membrane channel protein |
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| Protein accession | YP_001762546 |
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| Protein GI | 170728520 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01844] type I secretion outer membrane protein, TolC family |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.0000611538 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 5 |
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| Fosmid unclonability p-value | 0.000431125 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAAATTCA AGATCCGAAC GATATGTGCA GCCCTAACGC TTGCAGCAAC CTCTTCAGCG
GTTCAAGCCG ATGACTTATT GCAGATATAT CAACAGGCGC TAACAAGCGA TCCCGTTGCG
CTACAAGCTC AGGCTCAACG TGATTCACTG TATGAACAGA TAGAAGAGAA TCGTGCACCT
TTACTTCCAA CAATCAGTGC AAGCGTTGGT TACGGTAAAA GCTGGCGTGA TGAGCAAACT
CTACCTCAAA CAGACTCTAG CGGGCTCAAG GCTGCTATCA GTTTAAACCA AGTGATCTAT
GATCACAGCG CTTGGGTAGG ATTAAGCTTA GCAGAGCTAG CCGCTTCTCA GGCTGACTCT
ATTTACGCAT CCACCTTACA AACCTTAATT ATCCGTGTAA CTACGGCATA CTTCGATGTG
CTTTCTGCAA AAGATAATTT CGAGTTTAAA GGCTCTGAAA AACGTGCAAT TGAGCGTCAG
TTAGAGCAAA CAAAGCAAAG ATTTGCTGTA GGTCTAACTG CAATTACCGA TGTACATGAA
GCTCAGGCTC AATACGATTT AGCCCGCGCA TCTGAGATTT TAGCTGAAAA CCAGCTTATC
AATAGTTACG AAGCCTTACG TGAAATCACT GGTATCGATC ATAAGTCTAT CAATATTCTA
GACACTAACC GTTTCACCGC TGTCACCCCG ACACCAACAC TATCGAGTGA TTGGTTAAAG
ATGGCTGAAA CAAACAGTGT CGATCTGATG ACTAATCGCA TCGGTAAAGA TATCGCCCAA
GAGACGATTA CGCTTTATAA AGCTGGCCAT ATGCCCTCTT TAAGCTTAAA TGCTGGTTAT
GATACCAACA TTGAGCAGGA GAACCAAAAT GGCTCTCAAA ATGATTTTGA TAATGCCAAT
GTAGCATTAC AGCTTAGTAT TCCTATTTTT GAAGGCTTTA AAGTCAGCTC AAAAGTGAAT
CAGGCTCAAT ACCAGTTTGT TGAAGCAAGT GAGAAGATGG AGCAGACCTA CCGTAAAGTG
GTTAAAGATG TCCGCAACAA CTTTAATAAC GTCGGTGCTT CAATCAGTTC AATCAAGGCT
TATGAGCAAT CTGTCGTTTC ATCTGAGAGT GCACTCAGTG CTACCCAAGC AGGTTTTGAA
GTGGGTACTC GTACAATTGT CGATGTACTA AACCGTACTC GTGATCTATA TGACTCTAAG
CGTCAGCTAT CCGATGCAAG ATACAGTTAT ATCAAATCAA TTCTCGCGCT AAAGCAAGCG
GCTGGAACCT TGAATGAAGA TGATGTAATC GCCATCAACA ATGGCCTAAT AGCTCAAACT
ACAAACCCAT AG
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| Protein sequence | MKFKIRTICA ALTLAATSSA VQADDLLQIY QQALTSDPVA LQAQAQRDSL YEQIEENRAP
LLPTISASVG YGKSWRDEQT LPQTDSSGLK AAISLNQVIY DHSAWVGLSL AELAASQADS
IYASTLQTLI IRVTTAYFDV LSAKDNFEFK GSEKRAIERQ LEQTKQRFAV GLTAITDVHE
AQAQYDLARA SEILAENQLI NSYEALREIT GIDHKSINIL DTNRFTAVTP TPTLSSDWLK
MAETNSVDLM TNRIGKDIAQ ETITLYKAGH MPSLSLNAGY DTNIEQENQN GSQNDFDNAN
VALQLSIPIF EGFKVSSKVN QAQYQFVEAS EKMEQTYRKV VKDVRNNFNN VGASISSIKA
YEQSVVSSES ALSATQAGFE VGTRTIVDVL NRTRDLYDSK RQLSDARYSY IKSILALKQA
AGTLNEDDVI AINNGLIAQT TNP
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