| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_4158 |
|---|
| Symbol | dipZ |
|---|
| ID | 6118509 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella woodyi ATCC 51908 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010506 |
|---|
| Strand | + |
|---|
| Start bp | 5058221 |
|---|
| End bp | 5060050 |
|---|
| Gene Length | 1830 bp |
|---|
| Protein Length | 609 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 641635720 |
|---|
| Product | thiol:disulfide interchange protein precursor |
|---|
| Protein accession | YP_001762509 |
|---|
| Protein GI | 170728483 |
|---|
| COG category | [C] Energy production and conversion
[O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG4232] Thiol:disulfide interchange protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.18513 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAAAA TAATCACTCT GGCACTTTCA TTGGTGCTCA CAAGCTCCCT ACTACTGCTT
ACCCCTTTAG CTCATAGTGA AGGGGTTTTC AGTAACAGCA AGTTCAGCTT TCTTAAGGAT
GAACCTAAAT TAATGCCTGT TGACGAAGCC TTTGTCTTCG ATTTTAAGCA GGAAGGAGAA
CAACTTAAAA TAAGCTGGGT TATCGCTGAC GGTTACTACA TGTATCGCGA TAAACTCAAG
TTTGAAGCAG AGGGTGCATT ACTTGGTGAG ATAGCTCTAC CAAAAGGTAA AGAGCACAAC
GATGAATATT TTGGCGAACA AGAGGTTTAC TACTCCTTCG TTGAGTTCCC CATCGCGATA
AAAGAAGCTA GTGATCAGTC TAATGTCACC ATCACCTTTA TGGGCTGCGC CGAAGGAAAA
CTCTGCTTCC CTCCAACCAA AAAACAGGCA CTGTTATCGG CAGTCCCCCT CAATGACGGC
CTATTAAAAG ATAAAGTTCA AGAGCTATCC ACTCCAGAGG CTAGTAGTAA AACCGTAACA
GAGCCTATAA CACAGCAAGA TAGCTTAAGT CAGATGCTAT CAGGTGATAG CCTTCTGTGG
ACTTTAGTGA TCTTTTTTGG ATTAGGTATT GGCCTTGCGC TAACCCCGTG TGTTTTCCCA
ATGTATCCAA TTCTATCTGG CATCATAGTC GGCCAAGGGA AGAAGTTATC GACAGCTAAG
GCCTTTAGCC TCTCTATGGT CTATGTCCAA GGCATGGCGA TCACCTACTC CTTGTTAGGA
CTCGTAGTGG CATCGGCAGG CATGAAGTAT CAAGCGGCTC TGCAACATCC AGCTGTACTC
ATCGTATTAG CCATACTTTT CTTTGTCTTA AGCCTCTCTA TGTTTGGCCT ATACGAATTA
AAGCTACCTT CAAGTTGGCA AGAGAAGATG AACAGCTTCT CCAACAACCA GAAGGGAGGC
AATGTTATTG GTGTCTTCTT AATGGGGATC ATCTCAGGCT TAGTCGCCTC ACCTTGTACC
ACTGCTCCGC TCTCTGGTGC GCTGGTCTAT GTTGCTCAAA CTGGCGACCT ATTGCAGGGA
TTTTTGGCAC TATATGTATT GAGTATGGGC ATGGGACTAC CACTGCTTAT CATAGGTACT
TCAGGTGGTA AGCTACTGCC AAGAGCAGGT AGCTGGATGG ATATCATCAA GACCATATTT
GGCTTCCTTC TCATCGCTGT GTCTGTTGTG ATGATCGGCA GAATCTGGCC AGGCCTTATC
TCTGATATCC TATGGTCTAT CTGGGGTGTC GCGCTAATTG GTTACCTGAT GCACCAGAAT
AAGCTCACTG AGTTTAACTG GAAGCAATCG ACTCGTTCAG TTCTACTGAC TTTAGGCCTG
TTAGCTAGCT TCTCCTATGG TTTCCAAGCG GTAATGAGTG AGCTCGGACT GCAAAACCAT
AGCCAAGGTG AACAAACACA ACTTCATGGC CATAAACCCA TTAAATCCAT CGCTGACTTA
GAGGCAGAAG TGAGCGCCGC GGCAGCACAG GGCAAGCCAG TTATGTTAGA TCTTTATGCC
GACTGGTGCG TTGCCTGCAA AGAGTTTGAA GCTATCACCT TTAAAGATCC AGAGGTGCAG
AAACGTCTAT CTCAAATAGT CTTCCTGCAG GCTGATGTGA CTAAAAATGA TATGACTGAT
ATCGAACTGC TCGAACACTA TGACGTACTT GGATTGCCGA CACTGTTAAT GTTTGACAGC
TCTGGTGAGT TAAGTGATGA ACTAAGAGTC ACAGGCTTTA TGAAGCCTGA AGCGTTTGCT
AAACACTTAG ATCTATTACT GGCTAAATAA
|
|---|
| Protein sequence | MKKIITLALS LVLTSSLLLL TPLAHSEGVF SNSKFSFLKD EPKLMPVDEA FVFDFKQEGE
QLKISWVIAD GYYMYRDKLK FEAEGALLGE IALPKGKEHN DEYFGEQEVY YSFVEFPIAI
KEASDQSNVT ITFMGCAEGK LCFPPTKKQA LLSAVPLNDG LLKDKVQELS TPEASSKTVT
EPITQQDSLS QMLSGDSLLW TLVIFFGLGI GLALTPCVFP MYPILSGIIV GQGKKLSTAK
AFSLSMVYVQ GMAITYSLLG LVVASAGMKY QAALQHPAVL IVLAILFFVL SLSMFGLYEL
KLPSSWQEKM NSFSNNQKGG NVIGVFLMGI ISGLVASPCT TAPLSGALVY VAQTGDLLQG
FLALYVLSMG MGLPLLIIGT SGGKLLPRAG SWMDIIKTIF GFLLIAVSVV MIGRIWPGLI
SDILWSIWGV ALIGYLMHQN KLTEFNWKQS TRSVLLTLGL LASFSYGFQA VMSELGLQNH
SQGEQTQLHG HKPIKSIADL EAEVSAAAAQ GKPVMLDLYA DWCVACKEFE AITFKDPEVQ
KRLSQIVFLQ ADVTKNDMTD IELLEHYDVL GLPTLLMFDS SGELSDELRV TGFMKPEAFA
KHLDLLLAK
|
|---|
| |