| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_4122 |
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| Symbol | |
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| ID | 6118472 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | - |
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| Start bp | 5010357 |
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| End bp | 5011736 |
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| Gene Length | 1380 bp |
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| Protein Length | 459 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 641635683 |
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| Product | alpha-L-glutamate ligase |
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| Protein accession | YP_001762473 |
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| Protein GI | 170728447 |
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| COG category | [H] Coenzyme transport and metabolism
[J] Translation, ribosomal structure and biogenesis
[O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG0189] Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase)
[COG4067] Uncharacterized protein conserved in archaea |
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| TIGRFAM ID | [TIGR00768] alpha-L-glutamate ligases, RimK family |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.000000650409 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | unclonable |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.00401578 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAGTAATA AAATCATTGT CGGTAGTGAA GAGTGGTGCG CTTTACCTGG TTTAGGTATT
AAAGCGATTA AGGCCCGTGT CGATTCCGGA GCTAAAACAT CATCTATCCA CGCAATCAAT
ATCTCAACCT CTAAGCGCGA AGATGGCACT TGGGTGAGTT ACGAAGTTCA CCCTCTACAG
GGTGGCCGTA AAGTTGCCCT ACTGTGTGAG TCAAAACTTA TCGATCGTCG TGTGATCAAG
AGTTCAAATG GCGAAACAGA AAAGCGCTAT GTTGTACGCG AACAGCTACA ACTTGGTGAG
CAGAGTTGGG AGATTGAGCT GACTTTGACT AACCGTGCCA ACATGGGCTA TCGCATGTTG
CTGGGTCGTG AAGCTATGGG CAGTAAGATC TTAGTCGATC CTTCGAGCAC TTGCTGTTTA
GGTGAGATGA GCGACGATGA AGCTAAAGAG CTATATGGCC ATGTAGAGGT TCCTCGAAGT
GGTCTTAAAA TAGGATTACT GGCAAGTAAT CCAAACTTAT ACAGTAACCA GCGCATTATT
GAAGCTGGCC AGCAACGTGG CCACGAAATG TACTTCCTTA ATGTAAAGCA GTGCTATATG
AAGTTAGATG CATCTCAACC TGAGGTGCAC TACCGTGATG GTCGGATCTT AAATGATCTT
GATGCTGTTA TTCCACGTAT TCGTCCAAGT ATGACGTTTT ACGGCTGCGC ACTAACTCGT
CACTTTGAGA GTTTAGGTGT GATGGCATTG AACACCTCTG AAGCGATCAC TCGCTCTAGA
GATAAGCTGT TTTCTCTGCA GTTATTGCAG AAGAATAACT TAGATATCCC AACTAGCGGT
TTTGCAAACT CACCAGCGGA CACAACCGAT CTGATTGATA TGGTTGGTGG GGCTCCGCTG
ATTGTTAAGC TGCTTGAGGG AACTCAAGGT AAAGGTGTTG TGCTTGCTGA AACCCGAAAA
GCGGCAGAGA GTGTGATCAA TGCATTTAAA TCTCTGAAGG CTAACCTGTT GGTTCAGGAG
TTTATTAAGG AAGCACAAGG TAAAGATTTA CGCTGTTTTG TTATCGATGG CAAAATTGTT
GCGTCGATTG AGCGTACTGC GGCGCCGGGT GAGTTTAGAG CTAATATCCA TCAAGGTGGC
ACAGCTTCAT TGGTTCAGAT CTCTCCTGAG GAGAGAAAGC TTGCGATTAA AGCAGCTAAA
ACCATGGGGT TAGAAGTTGC CGGTGTTGAT ATCATCCGCT CAAGTAAAGG TCCTTTGTTG
CTAGAGATTA ACTCTTCACC TGGACTTGAA GGCATCGAGA CTGCAACGGG GATCGACGTT
GCTTCAGCGA TGATCGACTC AATTGAGAAA AGATTGGGCT GGAAAAAAGA GACAGCTTAA
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| Protein sequence | MSNKIIVGSE EWCALPGLGI KAIKARVDSG AKTSSIHAIN ISTSKREDGT WVSYEVHPLQ
GGRKVALLCE SKLIDRRVIK SSNGETEKRY VVREQLQLGE QSWEIELTLT NRANMGYRML
LGREAMGSKI LVDPSSTCCL GEMSDDEAKE LYGHVEVPRS GLKIGLLASN PNLYSNQRII
EAGQQRGHEM YFLNVKQCYM KLDASQPEVH YRDGRILNDL DAVIPRIRPS MTFYGCALTR
HFESLGVMAL NTSEAITRSR DKLFSLQLLQ KNNLDIPTSG FANSPADTTD LIDMVGGAPL
IVKLLEGTQG KGVVLAETRK AAESVINAFK SLKANLLVQE FIKEAQGKDL RCFVIDGKIV
ASIERTAAPG EFRANIHQGG TASLVQISPE ERKLAIKAAK TMGLEVAGVD IIRSSKGPLL
LEINSSPGLE GIETATGIDV ASAMIDSIEK RLGWKKETA
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