Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swoo_4117 |
Symbol | |
ID | 6118467 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella woodyi ATCC 51908 |
Kingdom | Bacteria |
Replicon accession | NC_010506 |
Strand | + |
Start bp | 5005264 |
End bp | 5006289 |
Gene Length | 1026 bp |
Protein Length | 341 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 641635678 |
Product | AraC family transcriptional regulator |
Protein accession | YP_001762468 |
Protein GI | 170728442 |
COG category | [K] Transcription |
COG ID | [COG2207] AraC-type DNA-binding domain-containing proteins |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 25 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 14 |
Fosmid unclonability p-value | 0.344929 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACTTTAG AAGACAAGTT AACAGTACCG ACTGAGGCAA CCACCCTATC TTCTTGGGCT CTTGCCATCT GCCGAACCAT AGACAGTTAC GGCGTCGAAA GTGGCGAATT ACTGCAGCAA GTTGGTATTA ACCCCACACT ACTTCAAGAC CCCAATGCTC GCATACCAAC AAAGCTCGTC ACACAACTTT GGCAACTGGC AGTGGTGACG ACCGGAGATG AATCCATAGG ACTAAAGGTG GCTAATTTTG TTCAGCCAAC CAGTTTTAAT GCTTTAAGCT TTTCGCTGCT AGTCAGTGAG TCACTACTTG ATGCTTGGGA GCGGGTAAAA CGCTACTATG AGATCATCAG CAATGTGCTA GAGATGAAAA TCGAGAGAGG CGAAAAAGAG TCCGCACTCT GCTTTATTCG TTTACCCGAA AAACACTATG CCGATGAGGC GATAGATGCC TTTATGGCAA CAAACCTCTC TATATCGCGA CAGATAAGTC ATGGGCAACT GCAACCAAGT AAGCTCGAAC TTGAGCGAGC CACTCCCATA AACCTTAGCC CCTTTCACTC GCTGTTTCTC TGTCCAATCG AATTCAATTC TGATGGTAAT CGTATCTACT TTACCAATGA AGCACTTAAC ATCCCATTTC CCTCAGCTAA TAGGGCGCTA GCACTGAAAA ATGATCTTGC CGTTGAGGAG TACCTAGCTC AGCTCTCGGC TCAATCCTTC AGCAGCAAGG TTGCTAAAGA GATAGTTATC GCCATGAGCC TAGGTAACCC AGAGCGAGAA AGCATAGCTA AAACATTCCA TATGAGCAGT CGAAACCTCC AGAGAAAGCT AAAACATGAG CAGACCAGCT TCAGTGAACT GTTAGATTCC ATCCGTAAGG ATCTTGCATT GAAATACATA CTCAATTCTG AAGTTGCAAT TATTGAGATA TCTTTTCGAT TAGGCTTCAA AGACCCAAGT AATTTTACCC GTGCATTTAA ACGCTGGTAC CAGAAATCTC CCCTCCAATA CCGTAAACAG AAATAA
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Protein sequence | MTLEDKLTVP TEATTLSSWA LAICRTIDSY GVESGELLQQ VGINPTLLQD PNARIPTKLV TQLWQLAVVT TGDESIGLKV ANFVQPTSFN ALSFSLLVSE SLLDAWERVK RYYEIISNVL EMKIERGEKE SALCFIRLPE KHYADEAIDA FMATNLSISR QISHGQLQPS KLELERATPI NLSPFHSLFL CPIEFNSDGN RIYFTNEALN IPFPSANRAL ALKNDLAVEE YLAQLSAQSF SSKVAKEIVI AMSLGNPERE SIAKTFHMSS RNLQRKLKHE QTSFSELLDS IRKDLALKYI LNSEVAIIEI SFRLGFKDPS NFTRAFKRWY QKSPLQYRKQ K
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