| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_4104 |
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| Symbol | |
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| ID | 6118454 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | + |
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| Start bp | 4985030 |
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| End bp | 4986982 |
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| Gene Length | 1953 bp |
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| Protein Length | 650 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 641635665 |
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| Product | choline/carnitine/betaine transporter |
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| Protein accession | YP_001762455 |
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| Protein GI | 170728429 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1292] Choline-glycine betaine transporter |
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| TIGRFAM ID | [TIGR00842] choline/carnitine/betaine transport |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 29 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAAAAC ACTTTGAACT TATCGATAAG CCAACCTTTT TTGGGGCTTT AATACTGCTT
TTTTCGGTTG TGATCCCCTT GCTTATATTT CCAGCAGAGG GTGCACATTG GATTGCTGTA
GCTAAAACTT TTATGACAGA TAAGCTAGGT TTTGCTTATC TTGGCCTAGG GTTAGCGGCA
TTCTTCTTTA TGATATATAT CATCTTCTCC GATATAGGCC AGATAAAACT TGGGGATCCT
GATGAAGCCC CTGAATTCGC TCTCGCCTCT TGGGCAGCGA TGCTATTTTG TGGTGGTATC
GGTGCAAGTA TCCTCTATTG GGGAACGATT GAATGGGCCT ACTACTACCA AAATCCCCCT
TTCCAGTTGG AAGCTGGTAG CGAGGAAGCT GTCCGCTGGG CAGCAACCTA CGGCCTATTC
CATTGGGGAC CGATTGCTTG GTGTATCTAT ATGATCCCAG CAATCCCGAT TGCCTATTTC
TTCTATGTTC GTAAGCAGCC TGTTCTTAAA GTTTCTGCTG CACTTATGCC TGTTATCGGT
GAAGCAAACA GCTTTGGCAA ACTCGGTAAA GTTATCGACA TTCTATTTAT CTTTGGTCTA
TTGGGGGGAG CTGCAACCAC ACTAGGTTTA GCTGCACCTT TGATCAATGA AGGGATAAGT
TATCTGTTCG GCATCCCCAC ATCCACAGGC AGCCAGATTG GCGTACTCTT ACTTTGTACG
GCCATATTTG CTTACTCATC CTATAAAGGG ATGGACGAAG GGATTAAAGT TCTAAGTAAC
ATAAACTTCT GGGGCGCGTT AGGCCTACTG GCTTTTGTTC TTGTCTGCGG TCCTACCATC
TTTATGTTAG AGACAGGTTT AGACTCTATT GGTCGCATGC TATCTAACTT TTTTGTTATG
GCGACTTGGG CAGAACCTTT TGGTGGTTTA GGAACCTTTG CTGATACTCA CTTCCCTCAA
GATTGGACCA TATTCTATTG GGCTTGGTGG TTGGTATTTG CACCGAGTAT GGGCCTGTTT
GTTGCGCGTA TCTCTCGCGG AAGAACCATT AAACAGATGG TATCTGGAGC CGTATTCTTT
GGCTCGCTAG GTTGTGCAAT GTACTTTATG ATCTTAGGTA ACTACGGATT ATCACTGCAG
TTATCGGGTC AGCTCGATGT GGTCGGCATA CTGAACTCAG AAGGGGCAAC CCGCGCTATC
TTCTCTATCT TAGAGCAGCT ACCGTTTAGC ACCTTGATCA TCGCTCTATT TACCTTGCTA
TGTATCATCT TCACTGCAAC CACTTTCGAC TCTATCTCCT ATATTCTGGC GTCGGTGGTA
CAGACAAATG TCACTGAAGA CCCAATGCGT TGGAACCGAC TTTTCTGGGC CTTTACCCTT
TCGTTTATGC CTTCAGTTCT GATGTTTATG GGTGGCTTAG CCACACTACA AACCGCTGCG
ATTGTAGGAG GGTTACCCCT ACTTGTTATC GCGATCATGT TGATGATCTC AGGCGTTAAA
GCAGCCATGT TAGATCTGAG CCATCAGGAT GATTATGTGG ATCCAGTGAT CAATATCTCT
GATCTACCAG AGGTCGATCC TTGGAGTAAA GAGGGCCAAG CCCTTGCTCG TTTTGAGCTG
TTACGAGATA ACGCTATTGA GGCTGCTAAC TTAGAGCGCG AAGCCATAGA TGCTATCTGG
TTGCTAAAGA AACAACTACG CAGGGAAGCT CTATCTCGTG GTGAGTCGAG CTTAGAGCTT
GGCAATGCTC CGGATGAGAT CATTACAGAG TTACGCCAAC TCACTGAGGA TGCGATGAAA
GCCAAAGAGC GCAAGCTAGA AGCTTCAGAA CAAGCTCAAG CAGCTAGAAG CTCTTTTAAC
GAGCTTATGC GTGACAAGGA GGAGGGTGAA CTCTCGTTGG CCCAAGAGGA AGCTAAAGCC
GCGATTCAAG CAAGATTGAA TACACCAGGC TAA
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| Protein sequence | MKKHFELIDK PTFFGALILL FSVVIPLLIF PAEGAHWIAV AKTFMTDKLG FAYLGLGLAA
FFFMIYIIFS DIGQIKLGDP DEAPEFALAS WAAMLFCGGI GASILYWGTI EWAYYYQNPP
FQLEAGSEEA VRWAATYGLF HWGPIAWCIY MIPAIPIAYF FYVRKQPVLK VSAALMPVIG
EANSFGKLGK VIDILFIFGL LGGAATTLGL AAPLINEGIS YLFGIPTSTG SQIGVLLLCT
AIFAYSSYKG MDEGIKVLSN INFWGALGLL AFVLVCGPTI FMLETGLDSI GRMLSNFFVM
ATWAEPFGGL GTFADTHFPQ DWTIFYWAWW LVFAPSMGLF VARISRGRTI KQMVSGAVFF
GSLGCAMYFM ILGNYGLSLQ LSGQLDVVGI LNSEGATRAI FSILEQLPFS TLIIALFTLL
CIIFTATTFD SISYILASVV QTNVTEDPMR WNRLFWAFTL SFMPSVLMFM GGLATLQTAA
IVGGLPLLVI AIMLMISGVK AAMLDLSHQD DYVDPVINIS DLPEVDPWSK EGQALARFEL
LRDNAIEAAN LEREAIDAIW LLKKQLRREA LSRGESSLEL GNAPDEIITE LRQLTEDAMK
AKERKLEASE QAQAARSSFN ELMRDKEEGE LSLAQEEAKA AIQARLNTPG
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