Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swoo_4072 |
Symbol | |
ID | 6118422 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella woodyi ATCC 51908 |
Kingdom | Bacteria |
Replicon accession | NC_010506 |
Strand | - |
Start bp | 4943993 |
End bp | 4944754 |
Gene Length | 762 bp |
Protein Length | 253 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 641635633 |
Product | ABC transporter related |
Protein accession | YP_001762423 |
Protein GI | 170728397 |
COG category | [V] Defense mechanisms |
COG ID | [COG1136] ABC-type antimicrobial peptide transport system, ATPase component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 18 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTTATCGA TGAAAAGTAT CAGTAAAGTA TTTAAAACGG ATTTAGTAGA GACCCATGCG CTACGAGATT TTAATTTAGA GGTGAATGAG GGAGAGTTTG TGGCGGTAAC TGGGCCATCG GGATCAGGTA AAACGACCTT TCTCAATATT GCAGGTCTGC TTGAAGGTTT TACCCATGGT GATTACTTTC TTGATGGCGT GAATATCTCT AACTTGAGTG ATAACAAGAG TGCAGCGATT CGAAACGAGA AGATAGGTTT TATCTTTCAG GGCTTTAACT TAATTCCTGA TCTAAATCTT GCTGAGAATG TTGAGGTACC ACTGCGCTAT CGTGGCTTTA ATGCCGCCGA GCGTAAACGT CGTGTGCAAC ATGCACTGGA GCAGGTTGGA CTGGCTGCAC GAATGAAGCA TCTGCCGTCA CAACTTTCCG GTGGTCAGCA GCAGCGTGTG GCTATTGCTC GTGCGCTGGC GGGAGAGCCA AGGTTTCTAT TGGCCGATGA GCCAACGGGT AACTTAGACA GCATGATGGC ACGTCAGGTG ATGGAGTTGC TTGAGGAGAT CAATAAGGCG GGAACCACGA TTATTATGGT AACCCATGAC CCTGAACTGG CTCGTCGTGC GCAGCGAAAC ATCCAGATTG TCGATGGCCA AGTATGTGAT TTTACCATGT ATCAAGGCGG TGCTGAGAAG CCTCATTTGG TGTCTGAAAC AGATTCGGCT AGTGATGGAC AGCAAGCTCA AACTGAACAA GTTGCAGGAT AA
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Protein sequence | MLSMKSISKV FKTDLVETHA LRDFNLEVNE GEFVAVTGPS GSGKTTFLNI AGLLEGFTHG DYFLDGVNIS NLSDNKSAAI RNEKIGFIFQ GFNLIPDLNL AENVEVPLRY RGFNAAERKR RVQHALEQVG LAARMKHLPS QLSGGQQQRV AIARALAGEP RFLLADEPTG NLDSMMARQV MELLEEINKA GTTIIMVTHD PELARRAQRN IQIVDGQVCD FTMYQGGAEK PHLVSETDSA SDGQQAQTEQ VAG
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