| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_4039 |
|---|
| Symbol | |
|---|
| ID | 6118389 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella woodyi ATCC 51908 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010506 |
|---|
| Strand | + |
|---|
| Start bp | 4914845 |
|---|
| End bp | 4917121 |
|---|
| Gene Length | 2277 bp |
|---|
| Protein Length | 758 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 641635600 |
|---|
| Product | TonB-dependent receptor |
|---|
| Protein accession | YP_001762390 |
|---|
| Protein GI | 170728364 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.0501183 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATCGAT TAATAAATAT AACTCTAATA ATCTCAATCT CTTCCGTTAC ACTCCCAGTG
CTAAGCAATG ACTCGGAAAT AGAAGTTATT GAAGTAAGAG CTCAAAAAAG AGTACAGCCT
TTGCAAAAAG TCGGCATCAC TATGGCCGCA TTTGGGGAGG AACAGCTAAA AGAGTTAGGT
GTAACCGACG TAGTTAATGT CGCTGCAAAT GTGTCAAATG TTCAAGTCAA CTACGGTCTA
GGCAATAACT TTTTCAACAT ACGAGGATTA GGGCTAAACG AGTTTACCTC TAACCTAGAT
GCACCAGTTG CAGTTCATGT AGATGAAGTT TATATGAGCA AGGGCTTTAT GACGGGAATG
ACACTATTTG ATATTGAACA TGTAGAAGTC CTTAAAGGCC CACAGGGGGA TCTTTTTGGT
CGCAATACCA CAGGTGGGGC CGTTAACTTT TTTACTAACA AACCTACATC CTACTTTGAG
GCTGGAGTCA GTGTTGGATA TGATAACTAT GACACCTTAA CCACAGAAAA CTTTATCTCT
GGCCCTTTGT CTGACAACCT TTCTGGACGA TTGTCCATGT ATATAACAGA GCAAGGTGAG
GGCTATTACT ACAACACCAA TCGCCAAGAC GATGAAGGGG CCGTAAAAGA GAAAGCCGTT
CGTGGCCAAC TCTTATGGGA AAATGATGAC GGAACATCTG CTCTATTGTC AATGCACTAT
GGTAAGGATA AATCTGAACT TCATCCCTAT GAAGGGGTAG GCAATACCTT ACCCGATGGA
AGTGGTTTTT GCCCTGCTTA CTTAGATGGA ACCGTGCAAG GGGATAATGC CAATTGCTTA
CGAGGTTTAG ATCTTATTTT CAATCCAGGC CAAGATATTA GTCAGTACTA CCCAGGAGAA
AGTGATCCCT ATATCACTCA AAATAACCTG AGCTTTACCG TCGATAATGA AAGCATAGGC
GGGTTAGTCA GAATAGAGCA TCAACTTGAT AATGCTACCC TCTCCTCTAT CACCGCCTAT
GAGCAATTCA GTCAAGATCA ACGTGAAGAC TCAGATGGTA GCCCTGTGAC CTCTGTTGAA
GTTTATTGGT TCACCGAATT TAAGCAGTTT ACTCAGGAGA TCAGGTTGTC ATCAGATTTT
GATCATAACA ACTGGAACTA CATTGTTGGA TTATTCTATG AACATGATGA CTTCGATAAC
GCAGATTATT TAACGGCATA TTTACCGTTC AATGGACTCA ACAATTACTC AAAGTACAAC
CAAAAAGTCG ATGCAGTAGC TGCATTTGCA CATATAGAAA ATGAGTTAAC GGAAGATTTA
AGATTAATTA GTGGCGTTCG ATACAGTTGG GAACAAACTA GCTTAACAGG GGGAACTTAT
AAAGGTGAGG GGCTGAAATC AATAGGAGGG GAAGAGCAAC CTGTCACCAT CACGGGAGTT
GCATCTACCG CAGCAAACCT TAGCGATGGC GGCCAACGAA CCGATGAAAA CGTCACATTT
AAAGCTGGGT TAGAGTGGTC ACCTCAAGAA GATGTACTCT ATTATGGCTC AATCTCTACA
GGGTTTAGAA GCGGTGGCTA CAGTGTGGCT TTTGCTGCAA CACAAGATGA ACTCACCAGT
TTAGAGCCCG AAGAGATCAC CGCTTATGAG ATCGGATTTA AATCTACACT AGCCGATAGG
AGCTTACAAT TTAACGGTTC AATTTTCCGT TATGACTTCC AAAATGGTCA TATTGATGTT
GATGCGCCTA ACTCTCCGGT ACCAATTACC ATTAATGCTG CTGAAATTGA AACAATCGGA
GCAGAGATTG ATCTTCAGTG GGTACCCATT GATGGGTTAA AACTCAGTTC AGGTGTTGGT
TGGGTCGATG CAGAATTAAA AAGCGAGTTA ACCTTACAAA CAGGTATTGG GGAAGTTCAA
CTACAGGGGA ATCGTCCTGC ATTTAATCCT AAATACACCT ACAATGGGCA GGCACGCTAT
GTGTGGGAGC TACACGATGG TTATGATCTG ATTTTTGCCA GTGATTGGAG CTGGAGAGAT
GAGCAATATC TCGAAGTGAA TAACCAACCT AGTAATTTAA TTGACGACTA TTGGATCGTA
AATGCACGTA TTGCACTGGA GTCAACCGAA AATGATTGGC GTATCTCTTT ATGGGGAAAA
AATATCACTG ACACTCAGTA CGTGACTTAC CTCAATGATC TGCCAGCATT TGGTTGGTTA
CTTCGTGGTT ATGGTGCTCC ATCGACCTAC GGCGCAACAT TTGAAATGAA GTTCTAA
|
|---|
| Protein sequence | MNRLINITLI ISISSVTLPV LSNDSEIEVI EVRAQKRVQP LQKVGITMAA FGEEQLKELG
VTDVVNVAAN VSNVQVNYGL GNNFFNIRGL GLNEFTSNLD APVAVHVDEV YMSKGFMTGM
TLFDIEHVEV LKGPQGDLFG RNTTGGAVNF FTNKPTSYFE AGVSVGYDNY DTLTTENFIS
GPLSDNLSGR LSMYITEQGE GYYYNTNRQD DEGAVKEKAV RGQLLWENDD GTSALLSMHY
GKDKSELHPY EGVGNTLPDG SGFCPAYLDG TVQGDNANCL RGLDLIFNPG QDISQYYPGE
SDPYITQNNL SFTVDNESIG GLVRIEHQLD NATLSSITAY EQFSQDQRED SDGSPVTSVE
VYWFTEFKQF TQEIRLSSDF DHNNWNYIVG LFYEHDDFDN ADYLTAYLPF NGLNNYSKYN
QKVDAVAAFA HIENELTEDL RLISGVRYSW EQTSLTGGTY KGEGLKSIGG EEQPVTITGV
ASTAANLSDG GQRTDENVTF KAGLEWSPQE DVLYYGSIST GFRSGGYSVA FAATQDELTS
LEPEEITAYE IGFKSTLADR SLQFNGSIFR YDFQNGHIDV DAPNSPVPIT INAAEIETIG
AEIDLQWVPI DGLKLSSGVG WVDAELKSEL TLQTGIGEVQ LQGNRPAFNP KYTYNGQARY
VWELHDGYDL IFASDWSWRD EQYLEVNNQP SNLIDDYWIV NARIALESTE NDWRISLWGK
NITDTQYVTY LNDLPAFGWL LRGYGAPSTY GATFEMKF
|
|---|
| |