| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_4001 |
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| Symbol | |
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| ID | 6118351 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | - |
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| Start bp | 4870313 |
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| End bp | 4872166 |
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| Gene Length | 1854 bp |
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| Protein Length | 617 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 641635562 |
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| Product | lipid ABC transporter ATPase/inner membrane protein |
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| Protein accession | YP_001762352 |
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| Protein GI | 170728326 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1132] ABC-type multidrug transport system, ATPase and permease components |
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| TIGRFAM ID | [TIGR02204] ABC transporter, permease/ATP-binding protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.530118 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGAGCCAAG ATCTCTCCTC TGCGTCCATG AATGTAAGTT CAAATACAAC AGCAACGGCT
CCGACTCATT CTGACAGGGA TAAGTCAGCT AAACGTGCGG TACTTCCCTG GATAGGCGGT
TTTCTTCGTC CCTATAAAAC TCGTGTTATC GCTGCCATTA TATTTCTGTT TATCGGTTCT
CTTTCTTGGC TTTCTTTAGG TCAAGGAGTT CGTTTGATGG TGGATGAGGG GTTTCTGCAA
GATAATGGTG AGAGGTTGAA TCAGATAATC TTCCTAGTTA TCGGCATCAC AGCCGTCAGC
AGCTCAGCAG TGTTTTGTCG ATTCTACTTG ATGACCTGGC TGGGTGAGCG GGTGAGCGCC
GATATTCGTC TAAAAGTGTA TGATCATCTA CTTAAACTCT CACCAGCCTT TTATGCCAAG
CTGCGAACAG GCGAGGTGAT ATCCCGATTT ACTGCTGACT CAACTCTGCT GCAATCAGTC
GTCGGTTCTA GTCTCTCAAT GGCGCTTAGG GCAAGTGTGA CCGTAATTGG TGGCATCGTG
ATGATGGCGA TCACTAGTTT GAAGATGACT GGCTTAGTGT TGCTTGCGGT ACCAGTAGTG
TTAGGACCTA TCTTCTTCTT TGGACGTAAG GTGCGAGATC TCTCCCGTCA GAGCCAAGAT
AGAGTGGGGG ATCTGGGCTC CTATGTCGAT GAAACCCTGC ACGAGATACA CACAGTACAA
GCTTATACCC ATGAAGCGCG GGATAGATCT CTGTTTGACG ACCGTGTCGA AGCTGTGATG
AGTGCGGCCA GTGGCCGAAT AAAATACCGC TCTATCTTAA TCTCCACTGT GATGTTTCTC
AGTATTTTAG CTATCTCATT GGTCACTTGG GTTGGCGCGC AGGATGTGAT GATTGGAGCT
ATTACTGGCG GCGAGCTGTC TGCATTTATG TTTTATGCTG TGATGGTGGC GGGCTCGGTT
GCCACCATCA GTGAAGTGAT TGGTGAAATT CAAAGAGCGG CTGGTGCAGC CGAGCGCCTG
ATTGAACTGG TAGAAGCCCC TGTGGATATT CCTGATGCCG AGCAGCCTTT GTTGTTACCG
GCTAAGGTCA CAGGTGGCCT TAAGTTAAAA GAGGTGCGTT TCGCCTATCA AAATATCCGC
GAGGGTGGCG GCAAAGCAGT ATTAGGTGAT GAGGTGATCC GCGGTTTATC ACTTAATATT
CAGCCCGGTG AAAGGGTTGC TTTAGTGGGG GAGAGTGGCG CGGGGAAGAG TACCCTGTTT
GAGCTACTGC AGAGATTTTA CAACTTAAAC GGTGGTGCAA TAGAGCTAGA TGGGGTCGAC
ATTGCTCAGT TGAAGCTTCA AGATCTGCGT CAGCAATATG CCCTTGTTCC ACAAGACTCG
GTCATCTTCG CCATGAGTGT GCTAGAGAAT GTGCGTTACG GCAGACTCGA TGCCAGCGAG
GAGGAGGTGA TCGCAGCGTG TAAGGCCGCT CGAGCCCATG AATTTATCAA TGAGTTTAGT
GATGGTTACC AGACCTATTT AGGTGAACGC GGCGTTAGGT TATCCGGCGG CCAGAAGCAA
CGTGTCGCCA TTGCCAGAGC CATACTTGCC GACAGGCCGA TACTGCTACT CGATGAAGCT
ACAAGTGCAC TAGATGCCAT CAGTGAGCAG CAGGTTAAGC AAGCGCTGGA AACCTTGATG
GAGGGCAAGA CCACACTGAT CATCGCCCAT CGCCTAGCAA CGGTACTCAA TGCCGATAGG
ATCCTTGTGA TGGACAAGGG AGAGCTAGTC GCAACTGGAA CTCATCAAGA GTTGATGCAA
TCGAGTGAGC TTTATCGTGA GTTTGCGAGT TTGCAGTTGA TAACAGAAAC TTAG
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| Protein sequence | MSQDLSSASM NVSSNTTATA PTHSDRDKSA KRAVLPWIGG FLRPYKTRVI AAIIFLFIGS
LSWLSLGQGV RLMVDEGFLQ DNGERLNQII FLVIGITAVS SSAVFCRFYL MTWLGERVSA
DIRLKVYDHL LKLSPAFYAK LRTGEVISRF TADSTLLQSV VGSSLSMALR ASVTVIGGIV
MMAITSLKMT GLVLLAVPVV LGPIFFFGRK VRDLSRQSQD RVGDLGSYVD ETLHEIHTVQ
AYTHEARDRS LFDDRVEAVM SAASGRIKYR SILISTVMFL SILAISLVTW VGAQDVMIGA
ITGGELSAFM FYAVMVAGSV ATISEVIGEI QRAAGAAERL IELVEAPVDI PDAEQPLLLP
AKVTGGLKLK EVRFAYQNIR EGGGKAVLGD EVIRGLSLNI QPGERVALVG ESGAGKSTLF
ELLQRFYNLN GGAIELDGVD IAQLKLQDLR QQYALVPQDS VIFAMSVLEN VRYGRLDASE
EEVIAACKAA RAHEFINEFS DGYQTYLGER GVRLSGGQKQ RVAIARAILA DRPILLLDEA
TSALDAISEQ QVKQALETLM EGKTTLIIAH RLATVLNADR ILVMDKGELV ATGTHQELMQ
SSELYREFAS LQLITET
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