| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_3986 |
|---|
| Symbol | |
|---|
| ID | 6118336 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella woodyi ATCC 51908 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010506 |
|---|
| Strand | + |
|---|
| Start bp | 4854091 |
|---|
| End bp | 4854567 |
|---|
| Gene Length | 477 bp |
|---|
| Protein Length | 158 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 641635548 |
|---|
| Product | copper resistance lipoprotein NlpE |
|---|
| Protein accession | YP_001762338 |
|---|
| Protein GI | 170728312 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis
[P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG3015] Uncharacterized lipoprotein NlpE involved in copper resistance |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 0.773846 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAATTAC AATTGATCAC ACTGCCCCTG TTGGCATTAA CCGTTTTAGC ATGCTCAGAT
TTAACCGACA GTAAATCTGC TCCTCAGCCC ATTAAAGAGA GTGTAAAAAG CGAAGAGATC
GCGCCCCCTA TCGCTGTAGG AGATAATAGC CAAAACTCGC TAGACTGGAA TGGTCGATAC
TCAGGCATCA CCCCTTGCGC CAGCTGTGAA GGGATTAAGA CTGAGCTCAT CCTCTACTAT
GACAACACCT ACAAGCTCGT CACTATCTAT CTAGGGAAAA GCAGTAAACG TTTCATTGAA
ACAGGTAAAC TTAAATGGAA TGAAGCGGGC GCAGCGATAA CTCTGCATGC TAACGGAAGT
GATCAATCAG GTAATCAATA TCAAGTAGGA GAGAATCAAC TCTTTATGCT AGATAGAGAG
GGGCAACGCA TCACAGGTGA GCTTGCGGAG TATTATCGGT TAGCCAAAGA GCAGTAA
|
|---|
| Protein sequence | MKLQLITLPL LALTVLACSD LTDSKSAPQP IKESVKSEEI APPIAVGDNS QNSLDWNGRY
SGITPCASCE GIKTELILYY DNTYKLVTIY LGKSSKRFIE TGKLKWNEAG AAITLHANGS
DQSGNQYQVG ENQLFMLDRE GQRITGELAE YYRLAKEQ
|
|---|
| |