Gene Swoo_3885 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSwoo_3885 
Symbol 
ID6118234 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella woodyi ATCC 51908 
KingdomBacteria 
Replicon accessionNC_010506 
Strand
Start bp4734168 
End bp4735394 
Gene Length1227 bp 
Protein Length408 aa 
Translation table11 
GC content50% 
IMG OID641635447 
ProductNa+ dependent nucleoside transporter 
Protein accessionYP_001762238 
Protein GI170728212 
COG category[F] Nucleotide transport and metabolism 
COG ID[COG1972] Nucleoside permease 
TIGRFAM ID[TIGR00804] nucleoside transporter 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.00000412566 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGGAAGTTT TCATCAGTTT GTTGGGAATG TTCAGCCTGA TCGGTTTGGC TGTGCTGATT 
TCAGAGAAGC GAACCGCCAT TAATCTGCGC ACGGTACTGG GGGCTTTAGC GTTCCAGATC
GCTTTCGGTG CATTTGTGAT GTATGTGCCT ATGGGGCAAT CCATGTTGGA CAGCGCCTCT
GGCGGTGTGA TGCATGTAAT AGGTTACGCT AACGAAGGTT TATCATTCCT GTTTGGCGAT
CTGGCTAAAT TTGGTGTTGG CTTCATCTTT GTGATTAACG TGCTATTTGT GGTGGTGTTT
GTCAGCGCCC TGATTGCCGT GCTGTATTAC TTAGGGATCA TGCAGTTAAT TATAGGCTTG
ATTGGTGGTG GCCTATCAAA GCTGCTTGGT ACCAGCCGCG CCGAGTCACT GTCTGCGACT
GCCAACATCT TTGTTGGTCC TATTGAAGCG CCCTCGATGG TGCGTCCATT CGTTAAGCAC
ATGACCCGCT CTGAACTATT TGCTGTGATG ACAGGTGGTT TAGCGTCTGT TGCTGGCGGC
ACCATGATTG GCTATATCCA GATGGGCGTC GACGTTAAAT ATGTACTAAC TGCTGCCTTT
ATGACTGCAC CTGCGGGTTT ACTGTTTGCC AAGCTTATCT GGCCTGAGAC TGAGGAGCCA
CAAAACGATA TCAAGAAGGT GATGGATGAG CAGGATGACA GACCTGCTAA TGTCCTTGAC
GCTGCAGCGG GTGGGGCGGC GATGGGGATG CAACAGGTTA TCTCGGTGTC GGCGCTACTG
TTAGCTTTCG TTGCCTTGAT CGCTATGGTT AACGGCATTA TTGGTGGGAT CGGTGGCTGG
TTTGGTTATG GCGAACTAAC TATGCAGATG ATCTTAGGTT ACCTGCTTGC ACCGTTGGCT
TGGATCATGG GGGTGCCTTG GAGTGAAGCG ATTCAAGCGG CTTCCTTTAT TGGCCAGAAA
ATGGTGATTA ATGAGTTTGT TGCCTATATC GACTTCCTTA AGGTTGCCGA TCAACTCTCA
GAAAAGACGC AGATTATTAT CAGTTTTACC CTGTGTGGCT TTGCCAATAT AGGCTCTTTG
GCCATGGTGA TTGGTGGCTT AGCGGCGCTT TGCCCTGAGC GCCGTCATGA TTTGAGTGCC
ATCGGTATGA AGGCGCTTAT CGCTGCGGCG TTAGCGAACT TAATGAGCGG TACTATCGCA
GGCTTACTCT TTAGCCTAGC GGGTTAA
 
Protein sequence
MEVFISLLGM FSLIGLAVLI SEKRTAINLR TVLGALAFQI AFGAFVMYVP MGQSMLDSAS 
GGVMHVIGYA NEGLSFLFGD LAKFGVGFIF VINVLFVVVF VSALIAVLYY LGIMQLIIGL
IGGGLSKLLG TSRAESLSAT ANIFVGPIEA PSMVRPFVKH MTRSELFAVM TGGLASVAGG
TMIGYIQMGV DVKYVLTAAF MTAPAGLLFA KLIWPETEEP QNDIKKVMDE QDDRPANVLD
AAAGGAAMGM QQVISVSALL LAFVALIAMV NGIIGGIGGW FGYGELTMQM ILGYLLAPLA
WIMGVPWSEA IQAASFIGQK MVINEFVAYI DFLKVADQLS EKTQIIISFT LCGFANIGSL
AMVIGGLAAL CPERRHDLSA IGMKALIAAA LANLMSGTIA GLLFSLAG