Gene Swoo_3862 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSwoo_3862 
Symbol 
ID6118211 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella woodyi ATCC 51908 
KingdomBacteria 
Replicon accessionNC_010506 
Strand
Start bp4706620 
End bp4707903 
Gene Length1284 bp 
Protein Length427 aa 
Translation table11 
GC content49% 
IMG OID641635424 
Product4-aminobutyrate aminotransferase 
Protein accessionYP_001762215 
Protein GI170728189 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0160] 4-aminobutyrate aminotransferase and related aminotransferases 
TIGRFAM ID[TIGR00700] 4-aminobutyrate aminotransferase, prokaryotic type 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones15 
Fosmid unclonability p-value0.612157 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACAAACA GCAGCTTACA AGCGAGAAAA GTTAAGGCCA TAGCTCGAGG CCAAGGTAAT 
GCGTATCCGG TTTATGTTGA GCGGGCTAAG AATGCGGAGC TCTGGGATGT TGAGGGGAAA
CGTTACATCG ACTTTGGGAC AGGTATTGCC GTATGTAATA CAGGGCACAG CCATCCTAAA
ATTGTTGCTG CGGTAAAAGC GCAACTAGAT AACTTCAGCC ATACCTGTGT CATGGTTAAC
CCCTATGAAT CGGCTGTCGA GCTTGCGGAA AAGCTAACGG AGATAGCACC AGGTGAGAGT
GATAAAAAGG CGATTTTTGT CACGACTGGC GCCGAAGCGG TGGAGAACTG CGTCAAAATT
GCTCGGGCTC ATACGGGGCG TCGCGGAGTT ATCGCCTTTA ATGGTGGTTT CCATGGTCGC
ACTAACTTGA CCATGGCATT AACTGGGAAG ATCACACCCT ATAAACATCA GTTTGGCCCT
TTTGCTGGCG ATGTTTTTCA TGCTCCTTTT CCAATTGATT ATCACAATAT TTCGGTTAAA
CACTCCCTTG ATGCATTAAA CAACCTCTTT AAGGTGGATA TTGCTCCCTG TGATGTGGCG
GCCATTATCG TTGAGCCAGT ACAAGGTGAA GGTGGTTTTT ATGCCGCGCC TGCCGAGTTT
TTACAGGCGT TACGTAGCTT GTGTGATGAC CATGGTATCG TCTTAATTGC TGATGAGATC
CAAACAGGCT TTGGCCGAAC CGGTAAGATG TTTAGCTTTG AGCATGCGGG TGTTGAACCT
GACCTCATCA CTATGGCTAA GGGAATTGCG GGTGGATTTC CTATTGCTGC GGTTGTTGGT
AAGAGCGAGA TCATGGATGC GCCGTTACCA GGAGGACTAG GTGGAACCTA TGGTGGCTCG
CCTGTTGCCT GTGTCGCAGC CCTGACCGTG CTTGATGTGA TCAAAGAGGA GGGCTTAGTT
GAGCGCGCAG CTCAGATTGG CGCAATTTTC AATGAGCGCT TAACGGCTTT GCAAGCTGAG
TATCCGCAAC TGATTGGTGA GGTACGTAAC CAAGGTGCCA TGATCGCCAT GGAGTTAGTC
AGTAATGGTG ACTGTGAGCA AGCTAATACC GCGTTAACTC AAGCCATTAT TGCGAAGGCG
GCGAAATATG GATTGATACT GCTGGCCTGT GGTTTCTATG GCAATGTGAT CCGCTTTCTG
CCAGCTCTCA CCATCAGTGA TGAGCTTATC AATGAAGGCT TAGATCAGTT TGTGCGCCTA
TTTGGTGAGG CTGCAAACTG CTGA
 
Protein sequence
MTNSSLQARK VKAIARGQGN AYPVYVERAK NAELWDVEGK RYIDFGTGIA VCNTGHSHPK 
IVAAVKAQLD NFSHTCVMVN PYESAVELAE KLTEIAPGES DKKAIFVTTG AEAVENCVKI
ARAHTGRRGV IAFNGGFHGR TNLTMALTGK ITPYKHQFGP FAGDVFHAPF PIDYHNISVK
HSLDALNNLF KVDIAPCDVA AIIVEPVQGE GGFYAAPAEF LQALRSLCDD HGIVLIADEI
QTGFGRTGKM FSFEHAGVEP DLITMAKGIA GGFPIAAVVG KSEIMDAPLP GGLGGTYGGS
PVACVAALTV LDVIKEEGLV ERAAQIGAIF NERLTALQAE YPQLIGEVRN QGAMIAMELV
SNGDCEQANT ALTQAIIAKA AKYGLILLAC GFYGNVIRFL PALTISDELI NEGLDQFVRL
FGEAANC