Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swoo_3862 |
Symbol | |
ID | 6118211 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella woodyi ATCC 51908 |
Kingdom | Bacteria |
Replicon accession | NC_010506 |
Strand | - |
Start bp | 4706620 |
End bp | 4707903 |
Gene Length | 1284 bp |
Protein Length | 427 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 641635424 |
Product | 4-aminobutyrate aminotransferase |
Protein accession | YP_001762215 |
Protein GI | 170728189 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0160] 4-aminobutyrate aminotransferase and related aminotransferases |
TIGRFAM ID | [TIGR00700] 4-aminobutyrate aminotransferase, prokaryotic type |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 15 |
Fosmid unclonability p-value | 0.612157 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGACAAACA GCAGCTTACA AGCGAGAAAA GTTAAGGCCA TAGCTCGAGG CCAAGGTAAT GCGTATCCGG TTTATGTTGA GCGGGCTAAG AATGCGGAGC TCTGGGATGT TGAGGGGAAA CGTTACATCG ACTTTGGGAC AGGTATTGCC GTATGTAATA CAGGGCACAG CCATCCTAAA ATTGTTGCTG CGGTAAAAGC GCAACTAGAT AACTTCAGCC ATACCTGTGT CATGGTTAAC CCCTATGAAT CGGCTGTCGA GCTTGCGGAA AAGCTAACGG AGATAGCACC AGGTGAGAGT GATAAAAAGG CGATTTTTGT CACGACTGGC GCCGAAGCGG TGGAGAACTG CGTCAAAATT GCTCGGGCTC ATACGGGGCG TCGCGGAGTT ATCGCCTTTA ATGGTGGTTT CCATGGTCGC ACTAACTTGA CCATGGCATT AACTGGGAAG ATCACACCCT ATAAACATCA GTTTGGCCCT TTTGCTGGCG ATGTTTTTCA TGCTCCTTTT CCAATTGATT ATCACAATAT TTCGGTTAAA CACTCCCTTG ATGCATTAAA CAACCTCTTT AAGGTGGATA TTGCTCCCTG TGATGTGGCG GCCATTATCG TTGAGCCAGT ACAAGGTGAA GGTGGTTTTT ATGCCGCGCC TGCCGAGTTT TTACAGGCGT TACGTAGCTT GTGTGATGAC CATGGTATCG TCTTAATTGC TGATGAGATC CAAACAGGCT TTGGCCGAAC CGGTAAGATG TTTAGCTTTG AGCATGCGGG TGTTGAACCT GACCTCATCA CTATGGCTAA GGGAATTGCG GGTGGATTTC CTATTGCTGC GGTTGTTGGT AAGAGCGAGA TCATGGATGC GCCGTTACCA GGAGGACTAG GTGGAACCTA TGGTGGCTCG CCTGTTGCCT GTGTCGCAGC CCTGACCGTG CTTGATGTGA TCAAAGAGGA GGGCTTAGTT GAGCGCGCAG CTCAGATTGG CGCAATTTTC AATGAGCGCT TAACGGCTTT GCAAGCTGAG TATCCGCAAC TGATTGGTGA GGTACGTAAC CAAGGTGCCA TGATCGCCAT GGAGTTAGTC AGTAATGGTG ACTGTGAGCA AGCTAATACC GCGTTAACTC AAGCCATTAT TGCGAAGGCG GCGAAATATG GATTGATACT GCTGGCCTGT GGTTTCTATG GCAATGTGAT CCGCTTTCTG CCAGCTCTCA CCATCAGTGA TGAGCTTATC AATGAAGGCT TAGATCAGTT TGTGCGCCTA TTTGGTGAGG CTGCAAACTG CTGA
|
Protein sequence | MTNSSLQARK VKAIARGQGN AYPVYVERAK NAELWDVEGK RYIDFGTGIA VCNTGHSHPK IVAAVKAQLD NFSHTCVMVN PYESAVELAE KLTEIAPGES DKKAIFVTTG AEAVENCVKI ARAHTGRRGV IAFNGGFHGR TNLTMALTGK ITPYKHQFGP FAGDVFHAPF PIDYHNISVK HSLDALNNLF KVDIAPCDVA AIIVEPVQGE GGFYAAPAEF LQALRSLCDD HGIVLIADEI QTGFGRTGKM FSFEHAGVEP DLITMAKGIA GGFPIAAVVG KSEIMDAPLP GGLGGTYGGS PVACVAALTV LDVIKEEGLV ERAAQIGAIF NERLTALQAE YPQLIGEVRN QGAMIAMELV SNGDCEQANT ALTQAIIAKA AKYGLILLAC GFYGNVIRFL PALTISDELI NEGLDQFVRL FGEAANC
|
| |