Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swoo_3822 |
Symbol | |
ID | 6118171 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella woodyi ATCC 51908 |
Kingdom | Bacteria |
Replicon accession | NC_010506 |
Strand | - |
Start bp | 4658896 |
End bp | 4659387 |
Gene Length | 492 bp |
Protein Length | 163 aa |
Translation table | 11 |
GC content | 41% |
IMG OID | 641635385 |
Product | putative V10 pilin |
Protein accession | YP_001762176 |
Protein GI | 170728150 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG4968] Tfp pilus assembly protein PilE |
TIGRFAM ID | [TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
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Plasmid Coverage information |
Num covering plasmid clones | 24 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 23 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | TTGTTACGGC ATGACAATGG GTTTACCTTA ATCGAGCTTG TGGTAGTTAT CATCATATTA GGGGTTTTAA GTGTTATTGC TGCGCCTAAA TTTATCTCTT TAAATAAAGA TGCCAAAGTG GCTGTTCTTG AGGGAGCCAG AGGAGCGCTG TCGACTGCGA ATAGCTTTAG TTACTCTAAG GCTGCATTGC AAGGTCAAGA GTTGGTGGAT GCTAGCTCAG CAAATATCGA TATGGACAGT GATGGGACTG CGGATTTAAT TGGTTATTAT GGCTTAATTA AGTTTGTTAT CTCAGCTAAA GAGTACGCTG GTTTAGATGA GGACTTAACA ATTAGCAAGC ATTATGGTGG CTCAGGTCCT ACTCTCCCTT ATTTCCTTAT CTCCTTTACC GATAATCCTG CTTCTGCAGT GACTCAATGT TTTCTATCAG TCTATTATCC AGATACTGCT GGCGGTAGTG TCACCTATGA GTTCGTCACA GAAGATTGTT AG
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Protein sequence | MLRHDNGFTL IELVVVIIIL GVLSVIAAPK FISLNKDAKV AVLEGARGAL STANSFSYSK AALQGQELVD ASSANIDMDS DGTADLIGYY GLIKFVISAK EYAGLDEDLT ISKHYGGSGP TLPYFLISFT DNPASAVTQC FLSVYYPDTA GGSVTYEFVT EDC
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