| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_3807 |
|---|
| Symbol | |
|---|
| ID | 6118156 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella woodyi ATCC 51908 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010506 |
|---|
| Strand | - |
|---|
| Start bp | 4646684 |
|---|
| End bp | 4648864 |
|---|
| Gene Length | 2181 bp |
|---|
| Protein Length | 726 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 641635370 |
|---|
| Product | ABC transporter related |
|---|
| Protein accession | YP_001762161 |
|---|
| Protein GI | 170728135 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG2274] ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.0349479 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCATCTC TTATCGATAG AATAAATTTT TCAGGCGGGA ATCAATTACC GGTTATTCAG
CAGACTGAAT CGGCAGAGTG TGGCTTGGCC TGTATGGCGA TGATTGCCAG TTACTATGGC
CACAATACCG ACATGTTTCA GTTGCGCCAG CTTCATAGGG TGTCGATGAA GGGCTCGACA
CTAAAGGGGA TGACAGAGAT TGCATCCAAA GTTGGCTTAA CCCACAGGGC GCTTAAGTGT
GATATCGATT CCGTTCACCA GCTCAAAACA CCCTGTATTT TGCATTGGAA CATGGATCAT
TTCGTTGTGT TAAAGAAGGT GTCGGGTAAC CGTTATCATC TTCATGACCC TGCTTTGGGA
GAGCGAATTT GCACTAAAGA GGAGCTCTCA TCGAGCTTTA CGGGTGTTGC GATGGAGTTT
ACCCCTTCGG GAAGCTTTAC GGCTCAGGAG GAGCCACCTA AAGCCACTCT CTCATCTTTC
TGGTCTAATC TTGTGGGTTG GAAGCGCTCC CTATTAACTG TTTTTCTATT TTCTATGTTG
TTGCAGGCGT TTATCTTAGT TACGCCCATC TATATGCAGC TAACTGTGGA TGATGTGCTT
ATCTCCAACG ACTACAGTTT GATGAATATT TTAGCTTTCG GTTTTGGTGG CGTACTCCTG
TTGCAAGCCC TCTCTACTGC GTTGCGCTCT TTGGTTATCA TGCTATTAGG TAATCAACTC
TCCCTGCAGA TGAACTCTAA TTTAGTGCGG CATCTGTTTA AGTTGCCAAT GGACTTTTTT
GAGAAGCGTC ATATAGGGGA TGTTGTTTCA CGTTTTCGAT CTTTAGACTC CCTAAAAAAT
CTGTTAACGA CCACATTAAT TGAGAGTCTA GTCGACGGGC TAATCGTTAT CGGACTTTTG
GTGATGATGT ATATCTACAG TGTCGATCTG ATGTTGTTGG TGCTATCGGC CTCTGCGCTA
TATCTGATTG TTCGCTCTAT CTCCTATAAG AAGCTCAGAA GCGTTAGCCG AGAGAATATT
GTTTGTACTG CGAAGAAAGA CAGTAACTTT ATGGAATCGG TCAGAGGGAT CCAGAGTATT
AAGCTGTTTA CTAAGGAGAG CGATAGACTC AATCTATTTG ATAACTATAA CGTGGACACC
GCCAATACCT CGATAAAGGT GGAGCGTCTG CGAGTGCTCT TTAGCTGGAC AAGTATGCTG
ATCTTCGGTT TGGAGAATAT TCTGGTTATC TACTTTGGTG CATCCATGGT GATGGAGAAC
CTGCTCACGG TAGGTATGTT ACTCGCCTTC GTTTCCTACA AGACTCAGTT TGAACAGAAG
ATAAGTAACC TTATCGATAA GTATATCGAA TTTAAGATGT GCTCTCTTCA TCTGGAGCGT
CTTGGTGATA TTACCTTGAC CAAAGAGGAG GCTGATCTAG GTGAGTTGGA TGAGGAGTTT
GAAGTAACAG GCTCTTTGAA GATGAATAAG ATCTGCTTTA GCTACTCAGA TGAAGACCCC
GATGTACTCA GTGAGATTAA TCTCACTGTT AGCCCAGGAG AGTCCGTGGC GATTGTCGGG
CCATCGGGTT GTGGCAAGAG TACCCTGATG AAAGTGATGC TAGGACTACT GAAGCCTACC
TCAGGTGCTG TGATGGTTGA TGGTCAAGAT ATCAGAAAGA CAGGTTTGCT AAATTTCAGA
AATCAGATTG CCAGCGTGCT ACAAAATGAC CAGCTCTTAT CGGGGACTAT CATGGAGAAT
ATTAGCTTCT TCAGTCAAGA CCCTGATAAA AGTTGGGCGG AGGAGTGTGC GCAGTTAGCT
GGGATCCATA AAGATATTTT GATGCTACCT ATGGGTTACC GCTCACTGAT TGGCGATATG
GGGTCATCAC TTTCTGGAGG ACAAGTTCAG CGCTTACTCT TGGCTAGAGC GCTCTATAAA
CGTCCTAAGA TCCTCTTTTT AGATGAAGCG ACATCGAGTT TGGATCTTCA TGCTGAGCAA
CACGTGAATA ACTCGATACG TAAGCTGAAT ATCACTCGGG TGATGATTGC CCACAGACCG
CAAACAATCA TGTCAGCTGA TCGCATTATT AAGTTTGTTA AAGGTGAGTG TATCGAGGTG
AACAAAGAGG ATTATGGCAA AGCCAGAAGA GTCGATAACC TTCCCACTCA TACGATGCCA
GTAGCCTCTA GTGCAAGGTA A
|
|---|
| Protein sequence | MPSLIDRINF SGGNQLPVIQ QTESAECGLA CMAMIASYYG HNTDMFQLRQ LHRVSMKGST
LKGMTEIASK VGLTHRALKC DIDSVHQLKT PCILHWNMDH FVVLKKVSGN RYHLHDPALG
ERICTKEELS SSFTGVAMEF TPSGSFTAQE EPPKATLSSF WSNLVGWKRS LLTVFLFSML
LQAFILVTPI YMQLTVDDVL ISNDYSLMNI LAFGFGGVLL LQALSTALRS LVIMLLGNQL
SLQMNSNLVR HLFKLPMDFF EKRHIGDVVS RFRSLDSLKN LLTTTLIESL VDGLIVIGLL
VMMYIYSVDL MLLVLSASAL YLIVRSISYK KLRSVSRENI VCTAKKDSNF MESVRGIQSI
KLFTKESDRL NLFDNYNVDT ANTSIKVERL RVLFSWTSML IFGLENILVI YFGASMVMEN
LLTVGMLLAF VSYKTQFEQK ISNLIDKYIE FKMCSLHLER LGDITLTKEE ADLGELDEEF
EVTGSLKMNK ICFSYSDEDP DVLSEINLTV SPGESVAIVG PSGCGKSTLM KVMLGLLKPT
SGAVMVDGQD IRKTGLLNFR NQIASVLQND QLLSGTIMEN ISFFSQDPDK SWAEECAQLA
GIHKDILMLP MGYRSLIGDM GSSLSGGQVQ RLLLARALYK RPKILFLDEA TSSLDLHAEQ
HVNNSIRKLN ITRVMIAHRP QTIMSADRII KFVKGECIEV NKEDYGKARR VDNLPTHTMP
VASSAR
|
|---|
| |