| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_3735 |
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| Symbol | |
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| ID | 6118084 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | - |
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| Start bp | 4548144 |
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| End bp | 4550030 |
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| Gene Length | 1887 bp |
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| Protein Length | 628 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 641635298 |
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| Product | TonB-dependent receptor plug |
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| Protein accession | YP_001762089 |
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| Protein GI | 170728063 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG4206] Outer membrane cobalamin receptor protein |
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| TIGRFAM ID | [TIGR01779] TonB-dependent vitamin B12 receptor |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.0000331916 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGGTACAC TATCTATTAA AGAGTCTAAT AAAGGCTCTA TCAAACTATC ACAAGTTGCA
CTGTTAGTGA GCAGTATCAT CAGCTTATCT TCATATTCGG CTATGGCTGA GGACGTTACT
GCCAATGCGG TCGACGTTGA TGAAAAGATC ACTGTAACGG GTTCACGTTT TGACAGAACC
GCCGATCAGC AGCTTACTGT TATCAATACT ATTGAACGTG AAGAGATAGC ACGTCTCAAT
CCTAAGTCTG TTGCCGATGT ACTAGAGACA TTACCAGGAG TTAGCATTTC ACGTAACGGT
GGTGCGGGCC AGGCGACATC TGTTAGTGTT CGCGGCAGCA ATTCAAATCA TGTATTAGTG
CTAATTGATG GCGTAAAAGT TGGTTCGGCA ACACTCGGCA CTGTTAGCTT TAATACGCTT
TCACCTGAAA ATATTGAGCG TATCGAAGTG TTAAAAGGAC CTCGTGCATC AGTTTGGGGC
AGCGACGCGA TTGGCGGCGT GATCCAAATT TTTACTCGTC AGTTAAAAGA TGGTGAGTGG
TTTGCTGGTG CAGAATACGG CAGCAACGAT TACATTCGCG GCTCGTTTGG CACAGGTATG
AGTCATGGTA AGGGCAGCAC AACGCTTGCT GTTAACCATG AACAGTCTGA TGGATACGAT
GTCTACAATG GTGCACCGGT TGAAAATGAC GATGACGGTT ATAACCGCAC CTCTTTATCG
TTAAAAGGTT CTCAGCAAAT TAATCAAAAC TGGCAAGCAC TTTGGAATGG CCAGTATGAT
AAAGGCAATA CTCAATACGA TGATATCTAT GCATTTGGCT CTGCCGATGA GTCAGACTTT
GATAACTACC TTTGGAACCT TGCTGCGCAG TATAGCAATG AGCAATTTAC CAGTAAGCTG
GCATTAAGCC AGTCTAGTGA TGCGAACGAA AACTTCCGTG GCGACGATAT CACGGTGCCG
GTTTCAGTAT TTGAAACCAA GCGCGATCAA ATTAACTGGA GTAACCAATA TCTAGCGGCT
AATGATTTAA CCTTCATCGG TGGTATTGAT TGGTCAAATG AAGCGGTTAA AGGTGATTAT
GCTCAAGATG AACGCGATAT TTTTGGAGCC TATATACTTG CGCAGAAGCA GTGGAGCCAA
TTACTTGCCG AAGTTGCAGT GCGTTATGAT GATGTAGAAA ACATTGACAG TGAAGTGTCT
TACAACGCCA GCCTCGCTTA CCAGCTTACT GAAGAGTGGC GTTTGGCGGC ATCAACTGGT
ACTGCTTTTA AAGCGCCGAC CTTTAATGAC TTATACTGGC CAGGTTCTGG TAACCCAGAT
CTGATTTCAG AGACAGCTAA AAGTTACGAT CTAACTTTGC ACTATCAAGC TAATGATATT
CACGCTTACA TCAGTGTGTT CAAAAACACA ATTGATAACC TAATTGCCTG GGTTCCTACT
GGTGAAAAAG ATGACTATGG TTTTGATATC TGGAAGCCTG CCAATATCAA TCAAGCTGAA
ATTTCAGGTG TTGAATTATT TACTAAATTT GGACTATTTG GATTCGACAA TCAATTAGCC
TATACCTATT TAGAGCCAGA GAATAAGAAA ACTGGTGAAA TGCTAATTGG CCGTAGTGTT
GAAGAGCTGA ACTATAGTTT AAGCTATCAA TGGCAAAGTT TCGATTTTCT TGCTAACTAT
CACTATCAAG GCAAGCGTTA CGCTGGTTAT GATTTATATC TTGAAGCATA TCATAAGCTA
GATTTAAGCA TTGGCTATCA TCTAGATGAT GCGTGGAGCT TACGCTTGAA AGCGAATAAC
CTGTTCGATG AAGAGATTAT TTCAGCGCAA AACTACTTTA GCCCTGGAAG AGAGTTTTTC
TTTAGCGTGA GTTACCAAGC GTTCTAG
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| Protein sequence | MGTLSIKESN KGSIKLSQVA LLVSSIISLS SYSAMAEDVT ANAVDVDEKI TVTGSRFDRT
ADQQLTVINT IEREEIARLN PKSVADVLET LPGVSISRNG GAGQATSVSV RGSNSNHVLV
LIDGVKVGSA TLGTVSFNTL SPENIERIEV LKGPRASVWG SDAIGGVIQI FTRQLKDGEW
FAGAEYGSND YIRGSFGTGM SHGKGSTTLA VNHEQSDGYD VYNGAPVEND DDGYNRTSLS
LKGSQQINQN WQALWNGQYD KGNTQYDDIY AFGSADESDF DNYLWNLAAQ YSNEQFTSKL
ALSQSSDANE NFRGDDITVP VSVFETKRDQ INWSNQYLAA NDLTFIGGID WSNEAVKGDY
AQDERDIFGA YILAQKQWSQ LLAEVAVRYD DVENIDSEVS YNASLAYQLT EEWRLAASTG
TAFKAPTFND LYWPGSGNPD LISETAKSYD LTLHYQANDI HAYISVFKNT IDNLIAWVPT
GEKDDYGFDI WKPANINQAE ISGVELFTKF GLFGFDNQLA YTYLEPENKK TGEMLIGRSV
EELNYSLSYQ WQSFDFLANY HYQGKRYAGY DLYLEAYHKL DLSIGYHLDD AWSLRLKANN
LFDEEIISAQ NYFSPGREFF FSVSYQAF
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