| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_3673 |
|---|
| Symbol | |
|---|
| ID | 6118007 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella woodyi ATCC 51908 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010506 |
|---|
| Strand | - |
|---|
| Start bp | 4477182 |
|---|
| End bp | 4478738 |
|---|
| Gene Length | 1557 bp |
|---|
| Protein Length | 518 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 641635224 |
|---|
| Product | AbgT putative transporter |
|---|
| Protein accession | YP_001762030 |
|---|
| Protein GI | 170728004 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG2978] Putative p-aminobenzoyl-glutamate transporter |
|---|
| TIGRFAM ID | [TIGR00819] p-Aminobenzoyl-glutamate transporter family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAGCAG ACAAACAGGT GCTTCCTGAT GAAGGGCCAC AAGGTATATT AGGCAAAGCG
TTAGATGGCA TTGAAAGGGT TGGTAATAAG CTTCCCGATC CCGCCATGTT ATTTTTAATT
TTGCTGTTTG CAGTTTGGGG GTTATCGGCT CTGTTATCTG GGGTTAGCTT TGAAGCTATC
GATCCTAGAA CCCAGATGCC TATTGAGGTG AATAACCTCT TGAGTCCAGA AGCCTTAACC
GGCTTCTTAA CCAGTATGGT GAAAACCTTT ACCGCTTTTG CGCCGCTCGG TGTGGTATTA
GTGGCTATGT TGGGGGTTGG GGTTGCTGAG CACTCCGGAT TTATCAACAC TGCGCTAAAA
CGCATGTTAA GAATTACCCC TGCTAAGCTG TTAACGCCGG CCGTGGTGTT GGTGGGAATT
ATCTCTCATA CAGCAACCGA TGCAGGTTAC GTGGTGGTTA TTCCGCTTGC TGGTGTGATC
TTCTTTACCG TAGGACGTCA TCCATTAGCG GGTATTGCAG CTGCATTTGC TGGTGTCTCT
GGTGGTTTTT GTGCCAACTT TATTCCTTCA GGTATCGACC CATTACTGCA GAGTTTTACT
CAAGCTGCTG CGCAAATCGT TGACCCTAAC ATTGAAGTTA ACCCGCTAAA TAACTGGTTC
TTCGCTGCAT CTTCCTGTAT CCCTATTACG CTGGTTATCT GGTATCTAAC AGATAAAGTA
CTAGAGCCAC GCCTAAATCG TACTCATAAG GTTAATCGTG AAGAGGTGGA TCTTCCCGCG
ATGGAAGAGG AGAAACCACT CGAGATTAAA GCGTTCCGTG TGGCAACCTT AGTGATGCTA
GTGGCAATTG TCGGCTTCTT CTCGTTAACC GTGCCTGAAA CTTCAACGCT ACGTGATGCT
GATGGTTCCT TAACTAGCTT TAAAGCGCCT TTGATGCAGT CAATTGTACC GCTGATCTTC
ATCTTCTTTA TGCTTCCAGG TTTAGTATAT GGCTATATGA CTGGCGCCTT TAAAAGCTCA
GCTGATGTTG TGCAAGCGAT GTCTAAGTCC ATGAGCGGCA TGTCTCACTA CATCGTAATG
GCGTTCTTTT GTGCCCAGTT TGTGGCAGCG TTTTCTCACT CTAACCTTGG GGCATTAATT
GCGGTCGAGG GCGCGGGAGC GCTTAAGGCG ATGAACCTGT CGGCTGAAGT GACTGTGATT
GGCATGATCT TCTTGGTGGG TTTCGTGAAC TTATTCGTGG GGTCTTCATC GGCTAAATGG
GCATTAATCG GACCTGTGCT GGTGCCTATG CTGATGCAGT TGAACATTAG TCCAGATCTG
TCTCAGGCCG CTTATCGAGT CGGGGATTCG AGCTCTAATA TCATTACGCC TTTGATGCCA
TACTTCCCCT TAGTGGTGGT CTACTGTCAA CGCTATGTGA AAAATATAGG CATTGGAACC
CTGATATCCA TGATGTTACC GTTCAGCCTC TGCTTATTAG CGATATGGAG TGCTTGGTTA
CTTCTGTATT GGTCACTTGG ACTCCCACTA GGTCTTGGTG CTAGCTACAC TTATTAG
|
|---|
| Protein sequence | MKADKQVLPD EGPQGILGKA LDGIERVGNK LPDPAMLFLI LLFAVWGLSA LLSGVSFEAI
DPRTQMPIEV NNLLSPEALT GFLTSMVKTF TAFAPLGVVL VAMLGVGVAE HSGFINTALK
RMLRITPAKL LTPAVVLVGI ISHTATDAGY VVVIPLAGVI FFTVGRHPLA GIAAAFAGVS
GGFCANFIPS GIDPLLQSFT QAAAQIVDPN IEVNPLNNWF FAASSCIPIT LVIWYLTDKV
LEPRLNRTHK VNREEVDLPA MEEEKPLEIK AFRVATLVML VAIVGFFSLT VPETSTLRDA
DGSLTSFKAP LMQSIVPLIF IFFMLPGLVY GYMTGAFKSS ADVVQAMSKS MSGMSHYIVM
AFFCAQFVAA FSHSNLGALI AVEGAGALKA MNLSAEVTVI GMIFLVGFVN LFVGSSSAKW
ALIGPVLVPM LMQLNISPDL SQAAYRVGDS SSNIITPLMP YFPLVVVYCQ RYVKNIGIGT
LISMMLPFSL CLLAIWSAWL LLYWSLGLPL GLGASYTY
|
|---|
| |