Gene Swoo_3580 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSwoo_3580 
Symbol 
ID6117914 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella woodyi ATCC 51908 
KingdomBacteria 
Replicon accessionNC_010506 
Strand
Start bp4372245 
End bp4372862 
Gene Length618 bp 
Protein Length205 aa 
Translation table11 
GC content47% 
IMG OID641635133 
Productpeptidylprolyl isomerase FKBP-type 
Protein accessionYP_001761939 
Protein GI170727913 
COG category[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG0545] FKBP-type peptidyl-prolyl cis-trans isomerases 1 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.000105609 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones12 
Fosmid unclonability p-value0.200904 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCTGACA AGTTTACTAC TATTGAAGCG CAAGCAAGTT ATGGCGTTGG TCGCCAGCTT 
GGTGAGCAGC TAGCTGCTAA CTCTTTCGAA GGTATCGATA TCTCAGCTGT ACAGCTAGGT
CTATCTGATG CATTTGACGG TAAAGAGAGT CAAGTTGCTA TGCAAGATCT TCAGGTTGCA
TTTACTGAGA TCAGCCAGCG CATTCAAAAG GTACAGGAAG CTGCCGCTGA AGCTGCCTCA
GCTGAAGGTG AAACATTCCT TGCTGACAAT GCTAAGCGTG ATGGCGTTCA GACATTAGAG
TCTGGCTTAC AGTATGAGAT CATCACCGAA GGTACTGGTG ATAAGCCAAG CCTAGATGCG
ACTGTTCGTA CTCACTACCA CGGTACTTTC ATCAGTGGCG ATGTGTTCGA TAGCTCTGTT
GTTCGTGATC AGCCTGCTGA ATTCCCAGTA TCGGGTGTTA TTGCTGGTTG GACTGAAGCA
CTTCAGCTAA TGCCAGTTGG TTCTAAGTGG AAGTTATATG TTCCACATCA CCTAGCGTAC
GGCGAGCGTG GAGCAGGTGC TTCAATCCCG CCATACTCGG CACTCGTATT TGAAGTCGAG
TTACTCGATA TTCTGTAA
 
Protein sequence
MSDKFTTIEA QASYGVGRQL GEQLAANSFE GIDISAVQLG LSDAFDGKES QVAMQDLQVA 
FTEISQRIQK VQEAAAEAAS AEGETFLADN AKRDGVQTLE SGLQYEIITE GTGDKPSLDA
TVRTHYHGTF ISGDVFDSSV VRDQPAEFPV SGVIAGWTEA LQLMPVGSKW KLYVPHHLAY
GERGAGASIP PYSALVFEVE LLDIL