| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_3577 |
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| Symbol | carB |
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| ID | 6117911 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | - |
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| Start bp | 4366764 |
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| End bp | 4369982 |
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| Gene Length | 3219 bp |
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| Protein Length | 1072 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 641635130 |
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| Product | carbamoyl phosphate synthase large subunit |
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| Protein accession | YP_001761936 |
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| Protein GI | 170727910 |
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| COG category | [E] Amino acid transport and metabolism
[F] Nucleotide transport and metabolism |
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| COG ID | [COG0458] Carbamoylphosphate synthase large subunit (split gene in MJ) |
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| TIGRFAM ID | [TIGR01369] carbamoyl-phosphate synthase, large subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.108884 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCAAAAC GTACAGATAT AAAAAGTATT CTTATCCTAG GTGCTGGTCC GATTGTTATC
GGTCAGGCAT GTGAATTCGA TTACTCTGGT GCACAAGCGT GTAAAGCGCT GCGCGAAGAG
GGTTATCGAG TTATCCTGGT GAACTCTAAC CCTGCAACCA TTATGACCGA CCCAGAGATG
GCTGATGCGA CCTATATCGA GCCGATCCAT TGGGAAGTTG TTCGTAACAT TATTGCAAAA
GAGCGTCCAG ATGCGATTTT GCCGACCATG GGTGGTCAAA CTGCACTGAA CTGTGCCCTT
GAGCTTGAGA GCAAAGGTGT ACTGGAAGAG TTTAACGTCG AGATGATTGG CGCGACAGCT
GATGCCATTG ATAAGGCTGA AGATCGTAGT CGTTTCGATA AAGCTATGAA GGCGATTGGT
CTTGAATGTC CACGCGCTGG TATCGCTCAC AGTATGGATG AAGCGAATGC TGTTGTGGCT
GAGCTTGGAT TCCCATGTAT TATCCGCCCA TCATTTACCA TGGGTGGTAG CGGTGGTGGT
ATCGCGTATA ACAAGGAGGA GTTTGAGGAG ATCTGTTCTC AAGGTCTTGA ACTTTCGCCA
ACCAGTGAAC TACTCATCGA CGAGTCGTTA ATCGGTTGGA AAGAGTATGA GATGGAAGTG
GTTCGTGATC GCAATGACAA CTGCATCATC GTCTGCTCAA TTGAAAACTT TGACCCTATG
GGTGTGCATA CCGGTGACTC AATCACTGTT GCCCCAGCAC AAACTCTGAC TGATAAAGAG
TACCAGTTGA TGCGTAATGC ATCGCTTGCA GTGCTTCGTG AGATTGGTGT TGAAACGGGT
GGCTCGAACG TCCAGTTTGG TATTAATCCA AAAGATGGCC GTATGGTTAT CATCGAGATG
AACCCACGTG TATCACGTTC ATCAGCACTC GCTTCTAAAG CAACGGGTTT CCCGATTGCA
AAAATCGCTG CAAAACTAGC GGTCGGTTTT ACCTTAGATG AGCTTAAGAA TGATATTACT
GGTGGTAATA CACCTGCATC ATTTGAGCCT GCTATCGATT ACGTAGTGAC TAAGCTTCCA
CGCTTTAACT TTGAGAAGTT TGCTGGTTCA AATGACCGTC TAACGACTCA GATGAAGTCG
GTAGGTGAAG TGATGGCCAT TGGCCGTACT TTCCAAGAGT CTCTGCAAAA AGCGTTACGC
GGTCTTGAAG TTGGCATGAA TGGTTTAGAC CCGATTATCG ACATCGATGA AGCGGATTCG
ATGGCGCGTA TTCGCCATGA ACTGCAGGAG CCAGGCGCAG ATCGTATCTG GTACATTGCC
GATGCATTCC GCGCTGGTTT ATCTATCGAT GATATCTTCG GTTTAACTAA GATTGACCCT
TGGTTCCTGA TTCAAATCCA AGATCTGTTG CAGCTTGAAG ATCAAGTGAA AGAGTCTGGT
ATGTCAGGAA TGAATAACAC ATTCCTACGA CAGCTAAAGC GCAAAGGTTT CTCTGACATT
CGCTTATCTA ACCTGCTTGG GATCAGTGAG TCTGAGATGC GTAAAATGCG TCAAAGACAT
GAGATCTTCC CAGTTTATAA GCGAGTTGAT ACCTGTGCTG CAGAGTTCTC GACTGACACA
GCTTACATGT ACTCTACCTA TGAGGAGGAG TGTGAAGCTG CTCCGTCAAA TCGTGACAAG
ATCATGATTT TAGGTGGCGG TCCTAACCGT ATTGGTCAAG GTATCGAGTT TGATTACTGT
TGTGTTCACG CTGCTTTAGC GCTGCGTGAA GATGGTTACG AGACCATCAT GGTTAACTGT
AACCCTGAAA CTGTATCAAC AGATTACGAT ACCTCTGACA GACTCTATTT TGAGCCAGTT
ACCCTTGAAG ATGTGCTTGA GATAGTACGC ATCGAAAAGC CAAAAGGCGT GATTGTTCAG
TATGGTGGTC AGACACCTCT TAAACTAGCT CGTGAGCTTG AAGCCGCAGG TGTACCGATT
ATTGGTACTA GCCCTGATGC TATTGACCGC GCCGAAGACC GTGAACGTTT CCAACAAGCG
ATTGAGCGTC TTGGTATGAA GCAGCCAGAA AATGATACGG TCACAACCGT TGAAGGTGCT
GTGCTTTCTG CTGAGCGTAT CGGTTATCCA TTGGTTGTTC GCCCATCTTA TGTATTGGGT
GGCCGCGCAA TGGAGATCGT GTATGACGAG CAAGACCTGC GTCGTTACTT CAATGAAGCG
GTCAGTGTTT CTAACTCATC ACCTGTACTT CTTGACCGTT TCCTTGATAA CGCGATTGAG
ATCGATATCG ATGCAGTATG TGATGGAGAA ACTGTTGTTG TTGGTTCTAT CATGGAGCAT
ATTGAGCAAG CTGGTGTCCA CTCTGGTGAT TCAGGTTGTT CACTGCCGCC ATATAGCTTA
AGTGACGATA TCCAGAACCG CATGCGTGAG CAGGTAGGTA AGCTGGCGAT GGAGCTAGGG
GTTATTGGCT TGATGAACGT CCAGTTTGCA GTGAAGGATG ATGAGATCTA TATGATTGAA
GTCAACCCTC GTGCTGCCCG TACTGTGCCG TTTGTATCCA AAGCGACTGG TGTTCCTTTA
GCTAAAATTG CAGCACGTGT GATGGCGGGT CAAAGCCTTA AGTCGCAGAA CTTTACTGAA
GAAGTGATCC CACCTTACTA CTCTGTAAAA GAGGTGGTAT TGCCATTTAA CAAGTTCCCT
GGTGTTGATC CTCTGCTTGG CCCTGAGATG CGCTCAACGG GTGAAGTGAT GGGTGTTGGC
GAGACATTTG CTGAAGCCTA TGCAAAAGCT CAGCTTGGCG CAACTTGTGA AGTGCCTAAG
TCTGGTCGTG CACTGCTTTC TGTACGTAAC AGTGACAAGG CACGTGTTGT CGACCTAGCG
GCTAAGTTAA TCGCTTTAGG TTATGAGATT GATGCGACTC ACGGAACAGC GGTTGTACTT
GGTGAAGCGG GCATTAATCC TCGTTTGGTT AACAAGGTTC ATGAAGGTCG TCCTCATATT
CTTGACCGTA TTAAGAATGA TGAGTACACC TATATCGTTA ATACAACCGA AGGACGTCAG
GCGATTGAAG ATTCTCGCCA GCTTCGTCGT GGTGCATTGC GTTATAAAGT GAATTATACA
ACGACTCTAA ATGCTGCTTT TGCTACCTGT ATGGCTCACG CGGCAGATGA CAGAACCAAT
GTGAATTCAG TTCAAGAACT ACACAGATTG ATTAAGTAG
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| Protein sequence | MPKRTDIKSI LILGAGPIVI GQACEFDYSG AQACKALREE GYRVILVNSN PATIMTDPEM
ADATYIEPIH WEVVRNIIAK ERPDAILPTM GGQTALNCAL ELESKGVLEE FNVEMIGATA
DAIDKAEDRS RFDKAMKAIG LECPRAGIAH SMDEANAVVA ELGFPCIIRP SFTMGGSGGG
IAYNKEEFEE ICSQGLELSP TSELLIDESL IGWKEYEMEV VRDRNDNCII VCSIENFDPM
GVHTGDSITV APAQTLTDKE YQLMRNASLA VLREIGVETG GSNVQFGINP KDGRMVIIEM
NPRVSRSSAL ASKATGFPIA KIAAKLAVGF TLDELKNDIT GGNTPASFEP AIDYVVTKLP
RFNFEKFAGS NDRLTTQMKS VGEVMAIGRT FQESLQKALR GLEVGMNGLD PIIDIDEADS
MARIRHELQE PGADRIWYIA DAFRAGLSID DIFGLTKIDP WFLIQIQDLL QLEDQVKESG
MSGMNNTFLR QLKRKGFSDI RLSNLLGISE SEMRKMRQRH EIFPVYKRVD TCAAEFSTDT
AYMYSTYEEE CEAAPSNRDK IMILGGGPNR IGQGIEFDYC CVHAALALRE DGYETIMVNC
NPETVSTDYD TSDRLYFEPV TLEDVLEIVR IEKPKGVIVQ YGGQTPLKLA RELEAAGVPI
IGTSPDAIDR AEDRERFQQA IERLGMKQPE NDTVTTVEGA VLSAERIGYP LVVRPSYVLG
GRAMEIVYDE QDLRRYFNEA VSVSNSSPVL LDRFLDNAIE IDIDAVCDGE TVVVGSIMEH
IEQAGVHSGD SGCSLPPYSL SDDIQNRMRE QVGKLAMELG VIGLMNVQFA VKDDEIYMIE
VNPRAARTVP FVSKATGVPL AKIAARVMAG QSLKSQNFTE EVIPPYYSVK EVVLPFNKFP
GVDPLLGPEM RSTGEVMGVG ETFAEAYAKA QLGATCEVPK SGRALLSVRN SDKARVVDLA
AKLIALGYEI DATHGTAVVL GEAGINPRLV NKVHEGRPHI LDRIKNDEYT YIVNTTEGRQ
AIEDSRQLRR GALRYKVNYT TTLNAAFATC MAHAADDRTN VNSVQELHRL IK
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