Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swoo_3571 |
Symbol | |
ID | 6117905 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella woodyi ATCC 51908 |
Kingdom | Bacteria |
Replicon accession | NC_010506 |
Strand | - |
Start bp | 4359154 |
End bp | 4360098 |
Gene Length | 945 bp |
Protein Length | 314 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 641635124 |
Product | protein-export membrane protein SecF |
Protein accession | YP_001761930 |
Protein GI | 170727904 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG0341] Preprotein translocase subunit SecF |
TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family [TIGR00966] protein-export membrane protein SecF |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.00137282 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 6 |
Fosmid unclonability p-value | 0.0015659 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGAACATTA ATATGATGAA TGGAAAGTCG TGGAATTTTA GTAATATGAG CCGATTAACT AAATGGCGCT ACTTCACTAG CTTTATCTCT TTAACCTTGA TGATCCTATC TGTGACAATT ATCTCCGTGA AAGGGTTTAA TTGGGGCTTA GATTTTACTG GCGGTGTAGT GACAGAGATC CGTGTCGATA AGGAGATATC CGCTAAACAG ATAGAGGTAT TACTGGCTAA GTCGTCGCAG CAAGAGGTGA GTGTTATCTC TGCAGGAGAG CTTGGGCGAT GGGTATTGAG ATATAGTCAA ACTCCAACTT CAGGTGATGT CAGTGCTAAT GCTTTGGATA TTACTGAGGT ACTCTCACCT TTAAAGAGTG AGGTCCAAGT ACTAAATACC AGCATAGTTG GTCCTCAGAT CGGGCAAGAG TTGGCAGAGC AAGGCGGGTT AGCGCTCTTG GTCGCCATGC TGTGTATTTT AGGGTATCTG AGTTTCCGCT TTGAGTGGCG ACTTGCAAGT GGTGCACTGT TTGCACTCTT TCACGATGTT ATCTTTGTGT TGGCTTTCTT CTCTCTGACG CAGATGGAGT TTAATTTAAC AGTACTTGCG GCTGTGTTGG CGATATTGGG TTACTCCCTT AATGACTCGA TTATCATTGC AGATAGGATA CGGGAGCTAT TAACGTTAAA GCCGAAGATG CCTATTGCTG ATGTCTGTAC CAGTGCAGTT AAAGCCACAT TCTCACGTAC TATGGTGACC AGCGGTACGA CATTGATGAC AGTAAGCGCA CTTTGGGTAA TGGGAGGAGG TGCGCTGGAG AGTTTTTCCA TTGCGATGTT TATCGGTATC TTAACGGGAA CCTGGTCATC GATATCTGTG GGGACCTGTT TACCTGAGTT ATTTGGGGTG AATTCAGAGC ATTATAAATT AGTGCCTGTC AGCGATACCC CATAA
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Protein sequence | MNINMMNGKS WNFSNMSRLT KWRYFTSFIS LTLMILSVTI ISVKGFNWGL DFTGGVVTEI RVDKEISAKQ IEVLLAKSSQ QEVSVISAGE LGRWVLRYSQ TPTSGDVSAN ALDITEVLSP LKSEVQVLNT SIVGPQIGQE LAEQGGLALL VAMLCILGYL SFRFEWRLAS GALFALFHDV IFVLAFFSLT QMEFNLTVLA AVLAILGYSL NDSIIIADRI RELLTLKPKM PIADVCTSAV KATFSRTMVT SGTTLMTVSA LWVMGGGALE SFSIAMFIGI LTGTWSSISV GTCLPELFGV NSEHYKLVPV SDTP
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