Gene Swoo_3571 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSwoo_3571 
Symbol 
ID6117905 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella woodyi ATCC 51908 
KingdomBacteria 
Replicon accessionNC_010506 
Strand
Start bp4359154 
End bp4360098 
Gene Length945 bp 
Protein Length314 aa 
Translation table11 
GC content44% 
IMG OID641635124 
Productprotein-export membrane protein SecF 
Protein accessionYP_001761930 
Protein GI170727904 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG0341] Preprotein translocase subunit SecF 
TIGRFAM ID[TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR00966] protein-export membrane protein SecF 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00137282 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0015659 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGAACATTA ATATGATGAA TGGAAAGTCG TGGAATTTTA GTAATATGAG CCGATTAACT 
AAATGGCGCT ACTTCACTAG CTTTATCTCT TTAACCTTGA TGATCCTATC TGTGACAATT
ATCTCCGTGA AAGGGTTTAA TTGGGGCTTA GATTTTACTG GCGGTGTAGT GACAGAGATC
CGTGTCGATA AGGAGATATC CGCTAAACAG ATAGAGGTAT TACTGGCTAA GTCGTCGCAG
CAAGAGGTGA GTGTTATCTC TGCAGGAGAG CTTGGGCGAT GGGTATTGAG ATATAGTCAA
ACTCCAACTT CAGGTGATGT CAGTGCTAAT GCTTTGGATA TTACTGAGGT ACTCTCACCT
TTAAAGAGTG AGGTCCAAGT ACTAAATACC AGCATAGTTG GTCCTCAGAT CGGGCAAGAG
TTGGCAGAGC AAGGCGGGTT AGCGCTCTTG GTCGCCATGC TGTGTATTTT AGGGTATCTG
AGTTTCCGCT TTGAGTGGCG ACTTGCAAGT GGTGCACTGT TTGCACTCTT TCACGATGTT
ATCTTTGTGT TGGCTTTCTT CTCTCTGACG CAGATGGAGT TTAATTTAAC AGTACTTGCG
GCTGTGTTGG CGATATTGGG TTACTCCCTT AATGACTCGA TTATCATTGC AGATAGGATA
CGGGAGCTAT TAACGTTAAA GCCGAAGATG CCTATTGCTG ATGTCTGTAC CAGTGCAGTT
AAAGCCACAT TCTCACGTAC TATGGTGACC AGCGGTACGA CATTGATGAC AGTAAGCGCA
CTTTGGGTAA TGGGAGGAGG TGCGCTGGAG AGTTTTTCCA TTGCGATGTT TATCGGTATC
TTAACGGGAA CCTGGTCATC GATATCTGTG GGGACCTGTT TACCTGAGTT ATTTGGGGTG
AATTCAGAGC ATTATAAATT AGTGCCTGTC AGCGATACCC CATAA
 
Protein sequence
MNINMMNGKS WNFSNMSRLT KWRYFTSFIS LTLMILSVTI ISVKGFNWGL DFTGGVVTEI 
RVDKEISAKQ IEVLLAKSSQ QEVSVISAGE LGRWVLRYSQ TPTSGDVSAN ALDITEVLSP
LKSEVQVLNT SIVGPQIGQE LAEQGGLALL VAMLCILGYL SFRFEWRLAS GALFALFHDV
IFVLAFFSLT QMEFNLTVLA AVLAILGYSL NDSIIIADRI RELLTLKPKM PIADVCTSAV
KATFSRTMVT SGTTLMTVSA LWVMGGGALE SFSIAMFIGI LTGTWSSISV GTCLPELFGV
NSEHYKLVPV SDTP