| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_3559 |
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| Symbol | truB |
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| ID | 6117891 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | - |
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| Start bp | 4345129 |
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| End bp | 4346082 |
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| Gene Length | 954 bp |
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| Protein Length | 317 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 641635110 |
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| Product | tRNA pseudouridine synthase B |
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| Protein accession | YP_001761918 |
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| Protein GI | 170727892 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0130] Pseudouridine synthase |
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| TIGRFAM ID | [TIGR00431] tRNA pseudouridine 55 synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 1 |
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| Fosmid unclonability p-value | 0.000000961174 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | ATGGCTCGTC GCTCTCGTGG CCGTTTTATC GACGGGATTG TACTCTTAGA TAAAGATACT
GGCATGAGTT CTAACTTTGC ATTGCAGCGA GTTAAGCGAC TTTTCAACGC CAATAAGGCT
GGGCATACCG GAGCGCTTGA TCCACTTGCA ACGGGTATGT TACCAATCTG CTTAGGTGAG
GCGACCAAGT TTTCCCAGCA TCTGCTCGAT GCAGACAAGC GTTATACCGT CACTGCAAAA
CTTGGAGAGC GAACCGATAC CAGTGACTCA GATGGTGAAG TGGTGCAGAC TCGCCCGATT
AACTTTACCC AAGAGCTGCT AATGGAGTCC TTGGAGCATT TTCGTGGCGA GACCATGCAA
GTGCCCTCTA TGTATTCTGC ACTTAAACAT GAGGGGCAAC CTCTGTATAA GTACGCGCGT
GAAGGCATTG AGGTACCAAG GAAGGCGAGA CCAATCAATG TCTTTGAACT TAACTTTATC
AGCCTTGAAG GTGATGAGTT AACCTTAGAT ATCCACTGTT CGAAAGGGAC CTACATACGC
ACCATCACAG ATGATCTGGG TGAGATGCTA GGCTGTGGTG CCCATGTGAT CATGTTAAGG
CGAACCCAAG TTGCTGGTTA CCCTTATGAG CGTATGGTCA GTCTTGAGCA GCTTAATGAG
ATGGTCAGTC AAGCAGAGGC TGACGGCGTT GAAGCTAAAT CTGTGCTCGA CCCCCTACTG
TTGCCTATGG ATACCGCAGT CAGTAAGTTT AGAGAGATAA ACCTCGCTGA GTCACAGGCT
CCATATCTAA TGAATGGTAA TCCCGTTCAT GCTTCAGGCC TAGTTGCTGA TGAAATTGTG
CGGATCACCA TAGGTGAAGA GCATAAGTTT GTTGGAATTG GTGCGATGAA CGATGACGGT
ATGTTGGCGC CAAAACGCCT AATCGTTATT CGTGAAGATG AAGTAAAGGC GTAA
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| Protein sequence | MARRSRGRFI DGIVLLDKDT GMSSNFALQR VKRLFNANKA GHTGALDPLA TGMLPICLGE
ATKFSQHLLD ADKRYTVTAK LGERTDTSDS DGEVVQTRPI NFTQELLMES LEHFRGETMQ
VPSMYSALKH EGQPLYKYAR EGIEVPRKAR PINVFELNFI SLEGDELTLD IHCSKGTYIR
TITDDLGEML GCGAHVIMLR RTQVAGYPYE RMVSLEQLNE MVSQAEADGV EAKSVLDPLL
LPMDTAVSKF REINLAESQA PYLMNGNPVH ASGLVADEIV RITIGEEHKF VGIGAMNDDG
MLAPKRLIVI REDEVKA
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