| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_3557 |
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| Symbol | |
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| ID | 6117889 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | + |
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| Start bp | 4342596 |
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| End bp | 4344629 |
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| Gene Length | 2034 bp |
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| Protein Length | 677 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 641635108 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_001761916 |
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| Protein GI | 170727890 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.026762 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 1 |
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| Fosmid unclonability p-value | 0.00000188852 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | ATGTCTGCCA GCTTTAAATC TCTTACTTGG AAACAGACCA GCTTAGTGGT TTTTTCCGCG
CTTTTCTTTG CTATCGCGAT ATTTATAGTA GAGATTGCGC TTGTAGGCGT ATCAGCAAGG
GATCAACTTA AAGCTTCTCA GAAAGAACTT CTTGATTCAG TGGAGCAACC CGCTGCAAAT
GCTGTTTGGG CCTTAGATGA TAACTTAGCT AAGCAGACTC TTGAGGGGGT GCTAAAGGTT
CAACATGTAG GCTCAGCCGT TATAGAGCTT GATGATGGCT CCATGTTCGT TTCAGTATCT
TCACCTAATT TACACCCCAG CATCTTTGAA AAACTCAGTC ATCGCCTCTT TGGTGATCTT
AAAGAGATAT CTCGCTCACT ACTCAGGCCT TTCTATTTTG AGGGCACAGA GAAGCAGCAG
CTAATCGGCA CTCTGACCAT ATTTTATGAT ACTCAAGGAC TGACAGACTC TCTCTTTTCT
CAGCTAAAGT TCAGTCTTAT TGCAACGCTG GCGCGCGCAC TCTTAATCAC CTTAGTTCTC
TCTGTGGTAT TTCATCGATT CCTGACACGC CCCATCGCCC ATATCAGTGA GGCTATCGAT
AAGATAGAGC CAGACTCCCC AGATGAAAAC CTGCTTCCCG TCGATAAATC GCACATTGAT
GACGAATTAG GCTTGGTGAC ATCAAAATTT AATCAAATCT TAATACAGTT CAGCCAAACC
CAGAGCAAAT TACGCAAGAT GGCAACTCGG GATCCATTAA CCGGACTGCC TAATCGCACT
CTATTGCTCG AAACGATCGC CGTCACAATT CAACGGGCCC GGGTTCATAA AAATCAATTT
AGTATGGTGT TTATCGATCT CGATAGATTC AAGAACGTCA ATGACTCACT GGGGCACGCA
TTAGGTGATA AATTTCTGGC GAGAATTGCC CGCGTATTAG AGCGAGTTGT CGGTGATAAA
GGAACCGTTG CCAGACTCGG TGGTGATGAA TTTGTTATCT TAGCCGATGA GATCCAAACG
CCGGATCAAG CTGCAGATTT TGTCGATAAT CTGTTAATTC AATTAAACAC CCCTATGCAG
CTCAATGAGC ACACCATTCA CCCCGCAGCA TCGGTGGGGA TCTCTATCTA CCCCGATGAT
GGCATGACGG CTGAAGATCT CATTCGTCAT GCTGACATCG CCATGTACAG TGCAAAAGCC
GCAGGCTCAA ACCAGTGGGC TTTCTTTAAG CAGCAGATGA CAGAGCGAGC TGCGGTTCGA
TTAAGAACCG AAGCATCACT CCATGACGCC CTTAAAAATG AGGAGTTCTT ACTCCATTAC
CAGCCTAAGT TTGATATTAA AACCGGCAAG ATTCTCGCTT GCGAAGCGCT AATAAGATGG
AAAAAAGATG GGCGCCTCAT CAGTCCACTC TCATTCATCC CAGTGGCTGA AGAGACTGGC
ATTATCATCC CTATCGGTCG ATGGGTCATA GAGGAAGCCT GTAAGACCCT CAGAGAGTGG
AAAATTAAAT ATAACTTTGC GCTACCTATT GCTGTCAATG TAGCCTCACA GCAGTTTGCA
GACGCCAGCT TGGTACCAGA TATCAAGCAG TTAGCCCTTA GATATCAGAT AAGCCCAGAG
TTATTAGAGA TAGAGATAAC TGAAACCTCA TTGATGAACG ACATTGAGTT GGCCATCTCA
AAACTTCAGC AACTAAAGTC AGCAGGCTTC GGCATCGCTG TTGATGATTT TGGCACAGGT
TACTCATCAC TCTCCTACCT TAGGCATCTG CCGATCACCA CCATGAAGAT AGATCGTTGC
TTTGTCACCG ATCTCCCACA AGAGAGCGCA ATTGCATCCA CTATCTTGAT GTTGGGCAAA
CAGTTAAATC TGAAGGTTGT CGCCGAAGGA ATAGAAACAG AGGAGCAGCT TAACTGGCTT
AGCAGTAATG AGTGTCAGAT AGGACAGGGA TTCTATTTCA GTAAACCCGT AGAGCATGAT
GAATTTGTCG ACAAATATAT CAGGCCAAAT ACCGCGAGTA TCAGTAATAT TTGA
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| Protein sequence | MSASFKSLTW KQTSLVVFSA LFFAIAIFIV EIALVGVSAR DQLKASQKEL LDSVEQPAAN
AVWALDDNLA KQTLEGVLKV QHVGSAVIEL DDGSMFVSVS SPNLHPSIFE KLSHRLFGDL
KEISRSLLRP FYFEGTEKQQ LIGTLTIFYD TQGLTDSLFS QLKFSLIATL ARALLITLVL
SVVFHRFLTR PIAHISEAID KIEPDSPDEN LLPVDKSHID DELGLVTSKF NQILIQFSQT
QSKLRKMATR DPLTGLPNRT LLLETIAVTI QRARVHKNQF SMVFIDLDRF KNVNDSLGHA
LGDKFLARIA RVLERVVGDK GTVARLGGDE FVILADEIQT PDQAADFVDN LLIQLNTPMQ
LNEHTIHPAA SVGISIYPDD GMTAEDLIRH ADIAMYSAKA AGSNQWAFFK QQMTERAAVR
LRTEASLHDA LKNEEFLLHY QPKFDIKTGK ILACEALIRW KKDGRLISPL SFIPVAEETG
IIIPIGRWVI EEACKTLREW KIKYNFALPI AVNVASQQFA DASLVPDIKQ LALRYQISPE
LLEIEITETS LMNDIELAIS KLQQLKSAGF GIAVDDFGTG YSSLSYLRHL PITTMKIDRC
FVTDLPQESA IASTILMLGK QLNLKVVAEG IETEEQLNWL SSNECQIGQG FYFSKPVEHD
EFVDKYIRPN TASISNI
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