Gene Swoo_3557 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSwoo_3557 
Symbol 
ID6117889 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella woodyi ATCC 51908 
KingdomBacteria 
Replicon accessionNC_010506 
Strand
Start bp4342596 
End bp4344629 
Gene Length2034 bp 
Protein Length677 aa 
Translation table11 
GC content45% 
IMG OID641635108 
Productdiguanylate cyclase/phosphodiesterase 
Protein accessionYP_001761916 
Protein GI170727890 
COG category[T] Signal transduction mechanisms 
COG ID[COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain 
TIGRFAM ID[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.026762 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value1.88852e-06 
Fosmid HitchhikerNo 
Fosmid clonabilitydecreased coverage 
 

Sequence

Gene sequence
ATGTCTGCCA GCTTTAAATC TCTTACTTGG AAACAGACCA GCTTAGTGGT TTTTTCCGCG 
CTTTTCTTTG CTATCGCGAT ATTTATAGTA GAGATTGCGC TTGTAGGCGT ATCAGCAAGG
GATCAACTTA AAGCTTCTCA GAAAGAACTT CTTGATTCAG TGGAGCAACC CGCTGCAAAT
GCTGTTTGGG CCTTAGATGA TAACTTAGCT AAGCAGACTC TTGAGGGGGT GCTAAAGGTT
CAACATGTAG GCTCAGCCGT TATAGAGCTT GATGATGGCT CCATGTTCGT TTCAGTATCT
TCACCTAATT TACACCCCAG CATCTTTGAA AAACTCAGTC ATCGCCTCTT TGGTGATCTT
AAAGAGATAT CTCGCTCACT ACTCAGGCCT TTCTATTTTG AGGGCACAGA GAAGCAGCAG
CTAATCGGCA CTCTGACCAT ATTTTATGAT ACTCAAGGAC TGACAGACTC TCTCTTTTCT
CAGCTAAAGT TCAGTCTTAT TGCAACGCTG GCGCGCGCAC TCTTAATCAC CTTAGTTCTC
TCTGTGGTAT TTCATCGATT CCTGACACGC CCCATCGCCC ATATCAGTGA GGCTATCGAT
AAGATAGAGC CAGACTCCCC AGATGAAAAC CTGCTTCCCG TCGATAAATC GCACATTGAT
GACGAATTAG GCTTGGTGAC ATCAAAATTT AATCAAATCT TAATACAGTT CAGCCAAACC
CAGAGCAAAT TACGCAAGAT GGCAACTCGG GATCCATTAA CCGGACTGCC TAATCGCACT
CTATTGCTCG AAACGATCGC CGTCACAATT CAACGGGCCC GGGTTCATAA AAATCAATTT
AGTATGGTGT TTATCGATCT CGATAGATTC AAGAACGTCA ATGACTCACT GGGGCACGCA
TTAGGTGATA AATTTCTGGC GAGAATTGCC CGCGTATTAG AGCGAGTTGT CGGTGATAAA
GGAACCGTTG CCAGACTCGG TGGTGATGAA TTTGTTATCT TAGCCGATGA GATCCAAACG
CCGGATCAAG CTGCAGATTT TGTCGATAAT CTGTTAATTC AATTAAACAC CCCTATGCAG
CTCAATGAGC ACACCATTCA CCCCGCAGCA TCGGTGGGGA TCTCTATCTA CCCCGATGAT
GGCATGACGG CTGAAGATCT CATTCGTCAT GCTGACATCG CCATGTACAG TGCAAAAGCC
GCAGGCTCAA ACCAGTGGGC TTTCTTTAAG CAGCAGATGA CAGAGCGAGC TGCGGTTCGA
TTAAGAACCG AAGCATCACT CCATGACGCC CTTAAAAATG AGGAGTTCTT ACTCCATTAC
CAGCCTAAGT TTGATATTAA AACCGGCAAG ATTCTCGCTT GCGAAGCGCT AATAAGATGG
AAAAAAGATG GGCGCCTCAT CAGTCCACTC TCATTCATCC CAGTGGCTGA AGAGACTGGC
ATTATCATCC CTATCGGTCG ATGGGTCATA GAGGAAGCCT GTAAGACCCT CAGAGAGTGG
AAAATTAAAT ATAACTTTGC GCTACCTATT GCTGTCAATG TAGCCTCACA GCAGTTTGCA
GACGCCAGCT TGGTACCAGA TATCAAGCAG TTAGCCCTTA GATATCAGAT AAGCCCAGAG
TTATTAGAGA TAGAGATAAC TGAAACCTCA TTGATGAACG ACATTGAGTT GGCCATCTCA
AAACTTCAGC AACTAAAGTC AGCAGGCTTC GGCATCGCTG TTGATGATTT TGGCACAGGT
TACTCATCAC TCTCCTACCT TAGGCATCTG CCGATCACCA CCATGAAGAT AGATCGTTGC
TTTGTCACCG ATCTCCCACA AGAGAGCGCA ATTGCATCCA CTATCTTGAT GTTGGGCAAA
CAGTTAAATC TGAAGGTTGT CGCCGAAGGA ATAGAAACAG AGGAGCAGCT TAACTGGCTT
AGCAGTAATG AGTGTCAGAT AGGACAGGGA TTCTATTTCA GTAAACCCGT AGAGCATGAT
GAATTTGTCG ACAAATATAT CAGGCCAAAT ACCGCGAGTA TCAGTAATAT TTGA
 
Protein sequence
MSASFKSLTW KQTSLVVFSA LFFAIAIFIV EIALVGVSAR DQLKASQKEL LDSVEQPAAN 
AVWALDDNLA KQTLEGVLKV QHVGSAVIEL DDGSMFVSVS SPNLHPSIFE KLSHRLFGDL
KEISRSLLRP FYFEGTEKQQ LIGTLTIFYD TQGLTDSLFS QLKFSLIATL ARALLITLVL
SVVFHRFLTR PIAHISEAID KIEPDSPDEN LLPVDKSHID DELGLVTSKF NQILIQFSQT
QSKLRKMATR DPLTGLPNRT LLLETIAVTI QRARVHKNQF SMVFIDLDRF KNVNDSLGHA
LGDKFLARIA RVLERVVGDK GTVARLGGDE FVILADEIQT PDQAADFVDN LLIQLNTPMQ
LNEHTIHPAA SVGISIYPDD GMTAEDLIRH ADIAMYSAKA AGSNQWAFFK QQMTERAAVR
LRTEASLHDA LKNEEFLLHY QPKFDIKTGK ILACEALIRW KKDGRLISPL SFIPVAEETG
IIIPIGRWVI EEACKTLREW KIKYNFALPI AVNVASQQFA DASLVPDIKQ LALRYQISPE
LLEIEITETS LMNDIELAIS KLQQLKSAGF GIAVDDFGTG YSSLSYLRHL PITTMKIDRC
FVTDLPQESA IASTILMLGK QLNLKVVAEG IETEEQLNWL SSNECQIGQG FYFSKPVEHD
EFVDKYIRPN TASISNI