Gene Swoo_3408 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSwoo_3408 
Symbol 
ID6117740 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella woodyi ATCC 51908 
KingdomBacteria 
Replicon accessionNC_010506 
Strand
Start bp4169061 
End bp4170254 
Gene Length1194 bp 
Protein Length397 aa 
Translation table11 
GC content47% 
IMG OID641634963 
Productnatural resistance-associated macrophage protein 
Protein accessionYP_001761771 
Protein GI170727745 
COG category[P] Inorganic ion transport and metabolism 
COG ID[COG1914] Mn2+ and Fe2+ transporters of the NRAMP family 
TIGRFAM ID[TIGR01197] NRAMP (natural resistance-associated macrophage protein) metal ion transporters 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value0.913071 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones33 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCAAGAT CTGCCCCTAA AATTGGACCG GGCGCCTTTA TCGCCGCCGC CTTTATTGGT 
CCAGGTACCG TCACCTTATG CACCATAGCC GGCGTCAAAT TTGGCTATGG CTTACTCTGG
GTAATGCTGC TCTCAATTGT CGCTACATAC ACCCTACAGG AGATGTCAGC AAGACTTGGC
CTTATCACAC AAAAAGGGCT GGCAGCCGTA ATTAAGGAGC AGATAAACTC CACGGTATTG
CGTAATATCA CGCTACTGTT GATCTTCTCC GCCATCGTTG TGGGTAACAT CGCCTATGAA
GCGGGGAACA TTACCGGGGC CTCATTGGGT CTCTCAGCTA TTTTTGGTGA AAGCAGCCTG
CCTTTTCTTC CTCTGCTTAT TGGCTCCGTG TCGGCAATAC TACTGTTTAT CGGCAGTTAT
AAACTACTTG AACGAGTACT TATCGGTCTT GTAATAGCAA TGAGTCTCTC CTTTTTTATT
ACCGCCATAC TCACTAAACC AGATTTAGGC GCTGTTTTAT CTGGTTTATT CACTCCACAG
GTCTCATCAC AGAACATTTT AATGGTGATA GGCTTAATCG GCACGACTGT GGTGCCCTAC
AACCTTTTTC TTCATGCCTC CCTAGTTAAG GAGGTGTGGC AGCATCCAAA TGAGCTTAAG
TTTGTCAAAC AAGACACCCT TATCTCAATC GGTTTTGGTG GCATCATCTC TATGGCAATC
ATCATCTGTG CAGCCTCGAT ACAGGGTGAC AGTGTCGAGA ACCTACTCGA TTTGGCCAAG
GGACTAAACC CGCTGTTCGG TACTTTCTCA TCACTCTTCC TAGGGATAGG TTTGTTTGCT
GCGGGGATAA CTTCAGCCAT TACAGCGCCA CTGGCTGCAG CCTTTGTGGG GCAACACTGC
TTCGGCTGGA AAGCGAACTT AAAAGACTGG CGTTTCAGAA CAATCTGGCT AACTGTCATC
ATAGTCGGAG TGATCAGCTC ATCGCTTCAA CTCAAACCGA TAGAGATCAT CAAGTTTGCT
CAAATAGCCA ACGGCTTACT GCTTCCCCTA CTTGCATCCC TTCTGCTTTG GATAGTAAAT
AAGACCCAAG TGTTGGGCCA GTACAAGAAT AGTCTCCGTC AGAATTTGAT AGGCGCGGTC
GTGATTGCTA TCACGCTTGT GTTGAGTATC AAGACACTCT ATAGCCTCTT TTAA
 
Protein sequence
MSRSAPKIGP GAFIAAAFIG PGTVTLCTIA GVKFGYGLLW VMLLSIVATY TLQEMSARLG 
LITQKGLAAV IKEQINSTVL RNITLLLIFS AIVVGNIAYE AGNITGASLG LSAIFGESSL
PFLPLLIGSV SAILLFIGSY KLLERVLIGL VIAMSLSFFI TAILTKPDLG AVLSGLFTPQ
VSSQNILMVI GLIGTTVVPY NLFLHASLVK EVWQHPNELK FVKQDTLISI GFGGIISMAI
IICAASIQGD SVENLLDLAK GLNPLFGTFS SLFLGIGLFA AGITSAITAP LAAAFVGQHC
FGWKANLKDW RFRTIWLTVI IVGVISSSLQ LKPIEIIKFA QIANGLLLPL LASLLLWIVN
KTQVLGQYKN SLRQNLIGAV VIAITLVLSI KTLYSLF