| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_3355 |
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| Symbol | |
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| ID | 6117687 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | + |
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| Start bp | 4111948 |
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| End bp | 4114761 |
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| Gene Length | 2814 bp |
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| Protein Length | 937 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 641634911 |
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| Product | hybrid sensory histidine kinase BarA |
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| Protein accession | YP_001761719 |
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| Protein GI | 170727693 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG0642] Signal transduction histidine kinase
[COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.0869798 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.00259338 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAATAAAG CCGACAACAT GACCAAATAT AGCCTGAGAT CATGGGTGCT TGTATTGGCG
TTAGCTCCAA CTATCCTCGT TGGGATCTTA TTAGGCAGCT ATTTTACCAT AAATCGTTTC
TATGAACTCG AAGAAACACT CATTGAGCAG GGTGGAAATA TCATTGAGCC ACTCGCTATT
GCCGCCGAGA TAGGTCTCGA GAAGCAAGAT TTTGAAACCA CTAAAAAATT GATCACAGCA
GCCCAACTCA ACAAATCCTC TCTAGTTCAG TTTATTGCCA TTTTCGATAC TGAAAATCGC
GTTATTGTCA CCTCTCACCA CTACAAAGAT CATGAGCTTA TGCGCTATGA TCAACCATTA
AGCAGCCTGA TGAGGACAGA GCTTGAACAG GTAGGTGACA GCTTGATTCT GCGTAGCCCT
ATCTTCTCAT CAGATCATGA ACTTAAACTG ACAAATTTCG GTGACAGAGA CTCCCAGCAA
ATATCAGCCG CTAAGCTGGG TTATATTGCG ATACTGGTGA ATAAAGAAAA TTCACTTCTT
GAGCAACATA GAGCTGCCGT TGCAGCCTTT ATAATTGTCC TGATCGGCGT GCAACTTAAT
TTACTCTTTA CCTTCCGTCT GGTTAAAAAT GTGACCCAAC CTATTACGGA GATGGTGAGG
GTCGTGGCAA AAATTCGTGA AGGTAAACTG GACACCCGGG TCGATGGAAA TCTTATTGGT
GAGCTGGATC TGCTTAAACG CGGTATTAAT GCCATGGCAA GCTCGCTCTC TGAATACCAT
GACGAGATGC AACAAAATAT CGATCAGGCC ACCTCAGATC TGAGGGAAAC ACTGGAACAG
ATTGAGATCC AAAACGTCGA GCTGGATTTA GCGAAGAAAA GAGCCCTTGA GGCCAGCCGG
ATAAAATCTG AGTTTTTAGC CAACATGTCC CACGAACTTA GAACCCCACT TAATGGTGTC
ATCGGATTCG CCAAACAGCT ACTGAAAACG CCCCTGCATA CGAGTCAACA GGACTACATC
AACACCATAG AGAAGAGTGC AACTAACCTT CTTGAGATAA TTAACGACAT CTTAGACTTC
TCTAAATTGG AGGCAGGAAA GCTGGTATTA GAGAGCCTAC CTTTCGCCCT ACGCGAACTA
GTTGGTGATA CAGTAACTAT CCTATCAAAC AGTGCCCGAG AGAAAGATAT TGAGCTCGTT
ATCGACATAG ATCAATCAGT CCCCGAAGCC TTGTGCGGCG ATCCTATGCG AATTGGTCAG
ATCCTAACAA ACTTAATAGG CAATGCTATC AAGTTCACCG ATAGCGGTAG TGTTCACTTA
AGTCTTAAGC TCACTGATGG CAGCAAAGAT AAAGTAAACA TCAGGTGCGA GATAACAGAT
ACAGGGATTG GTATAGACCC TCAGCAGCAG GAGATTCTTT TTCAAGCCTT TGGCCAAGCA
GACTCCTCAA TTTCACGTCG CTTTGGCGGT ACTGGACTGG GTTTAATTAT CACTAAGCGT
CTGGTTAACC GTATGGGTGG CCAGATAGGG TGTAACTCTA AAGCCAACGA AGGCTCAACG
TTCTGGTTTA CCCTTCCATT AGAAACCAGC CAATACCCGG TAGGTCACTT CCTCACAACA
GAGAAACTGC TCAACAAGTC GATGTTACTT ATCGAGCCAA GAGAGTTGTC TAACAAGACA
CTACTCAAAC AGTTTCAATA CTGGGGGATG AAAACAACCA ATATTGGCTC AACGAGCCAA
CTTGCAGAGT GCTCACTACC TGATTCCAAG AAATATGACT ATGCCGTCGT GAGCTGCAAA
GCGCTCAACC CCGATAAGGA CACCACTGAA CAGCTAAAAT CCATTAAAGA CTTATCTCAA
TTTGTCCTCT ACCTTGTGTG TACGAATGAG CAAGACACTC ACACCATATT TGATACCGTA
GATAAAATAT TACCGGCTCC AATCAATGAA AAGGTTTTAG CTGAAATACT TATCGATCCA
AAATCCGATA CAAGCAGTCC ACACCAATTA GAGGAACACG CCCAAGTTGA GCCTATAGCC
AGAGAGAACC TCAACGTATT AGCGGTCGAT GATAACCCTG CAAACCTCAA ATTAATCGAT
ACCCTACTAA AAGAGTTAGT GAGCCAAGTC ACAGTGGTAG ACAATGGTCA GGGGGCTGTG
AATATCGCCC AAGAGCGCAG TTTCGATCTC ATCTTCATGG ATATTCAGAT GCCAGGTACA
GATGGGATTA GTGCCACTAA GCAGATTAGA CAACACTCGC TTAACCGTAA CACACCGATC
ATTGCGGTGA CCGCCCATGC GATTGCTGAA GAGCGGGAGA TGATCCAACA AAGCGGTATG
GATGGTTATC TGCCTAAACC TATCGATGAA GCGGCGTTAA AGAGCGTGAT CAACCGCTGG
AAAACGCGCC CTAAGTTTAC CCATTTCGAC CCCTTTACCC TTAACTGGGA GCTGTGCCTC
ACACAAGCCA ATCAGAAGCC AGATTTGGCA CTGGATATGC TCAAGATGTT AGTGGCATCA
CTGCCTGAAA CCACAGCTCA GATAAAACAG GCATTAGAGG AGTTTAATCA AGACTCTATG
CTCGCCTCAG TGCATAAACT CCATGGCGCA TGCTGTTATT GTGGCGTACC TACCACACAA
AAGCTTTGTC AGGAGATAGA ATCAAGTTTG AAACGCGGCT CGGCCGTTGC CGATGTCGAA
CCTGAAATAC TAGAGTTACT TGACGAGCTA ACTAAGGTAG AATCAGCCGC AAATCAAGTG
ATATCACAGT TATCAACGGA TGTAATAGAT GACAACCAAA CTAGGCTTCT TTAA
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| Protein sequence | MNKADNMTKY SLRSWVLVLA LAPTILVGIL LGSYFTINRF YELEETLIEQ GGNIIEPLAI
AAEIGLEKQD FETTKKLITA AQLNKSSLVQ FIAIFDTENR VIVTSHHYKD HELMRYDQPL
SSLMRTELEQ VGDSLILRSP IFSSDHELKL TNFGDRDSQQ ISAAKLGYIA ILVNKENSLL
EQHRAAVAAF IIVLIGVQLN LLFTFRLVKN VTQPITEMVR VVAKIREGKL DTRVDGNLIG
ELDLLKRGIN AMASSLSEYH DEMQQNIDQA TSDLRETLEQ IEIQNVELDL AKKRALEASR
IKSEFLANMS HELRTPLNGV IGFAKQLLKT PLHTSQQDYI NTIEKSATNL LEIINDILDF
SKLEAGKLVL ESLPFALREL VGDTVTILSN SAREKDIELV IDIDQSVPEA LCGDPMRIGQ
ILTNLIGNAI KFTDSGSVHL SLKLTDGSKD KVNIRCEITD TGIGIDPQQQ EILFQAFGQA
DSSISRRFGG TGLGLIITKR LVNRMGGQIG CNSKANEGST FWFTLPLETS QYPVGHFLTT
EKLLNKSMLL IEPRELSNKT LLKQFQYWGM KTTNIGSTSQ LAECSLPDSK KYDYAVVSCK
ALNPDKDTTE QLKSIKDLSQ FVLYLVCTNE QDTHTIFDTV DKILPAPINE KVLAEILIDP
KSDTSSPHQL EEHAQVEPIA RENLNVLAVD DNPANLKLID TLLKELVSQV TVVDNGQGAV
NIAQERSFDL IFMDIQMPGT DGISATKQIR QHSLNRNTPI IAVTAHAIAE EREMIQQSGM
DGYLPKPIDE AALKSVINRW KTRPKFTHFD PFTLNWELCL TQANQKPDLA LDMLKMLVAS
LPETTAQIKQ ALEEFNQDSM LASVHKLHGA CCYCGVPTTQ KLCQEIESSL KRGSAVADVE
PEILELLDEL TKVESAANQV ISQLSTDVID DNQTRLL
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