Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swoo_3321 |
Symbol | |
ID | 6117642 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella woodyi ATCC 51908 |
Kingdom | Bacteria |
Replicon accession | NC_010506 |
Strand | + |
Start bp | 4069913 |
End bp | 4070395 |
Gene Length | 483 bp |
Protein Length | 160 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 641634866 |
Product | phosphoribosylaminoimidazole carboxylase, catalytic subunit |
Protein accession | YP_001761685 |
Protein GI | 170727659 |
COG category | [F] Nucleotide transport and metabolism |
COG ID | [COG0041] Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase |
TIGRFAM ID | [TIGR01162] phosphoribosylaminoimidazole carboxylase, PurE protein |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.0094744 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 6 |
Fosmid unclonability p-value | 0.00118052 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGAAAGTTG GTATCATTAT GGGTTCCAAA TCTGACTGGC CGACCATGGA ACATGCGGCG CAAATGTTAG ATACATTTGG TATCGCCTAT GAAACTCGTG TGGTTTCAGC ACATCGAACC CCGCAGCTAC TCGCTGAATA CTCCTCAACT GCTGCAGAAC GTGGCATAAA AGTCATTATT GCTGGTGCTG GCGGTGCTGC CCACCTTCCA GGCATGGTTG CTGCTCACAC CAGCTTGCCA GTTTTGGGCG TGCCAGTTAA ATCTAAAGCC CTCAACGGCA TTGACTCACT ACTCTCTATT TGCCAAATGC CGAAAGGGGT TGCGGTAGGT ACCTTGGCGA TTGGCGATCC AGGTGCTGCC AATGCAGGCT TATTAGCCGC GCAAATTCTA GGCTGTCAGC AACCTGAAAT CTTTGCGAAA ATAGAAGCTT TCCGTCAGGC ACAAACCGAC TCAGTACTTC TTAATCCGGA CCCTGCTATT TAA
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Protein sequence | MKVGIIMGSK SDWPTMEHAA QMLDTFGIAY ETRVVSAHRT PQLLAEYSST AAERGIKVII AGAGGAAHLP GMVAAHTSLP VLGVPVKSKA LNGIDSLLSI CQMPKGVAVG TLAIGDPGAA NAGLLAAQIL GCQQPEIFAK IEAFRQAQTD SVLLNPDPAI
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