Gene Swoo_3321 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSwoo_3321 
Symbol 
ID6117642 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella woodyi ATCC 51908 
KingdomBacteria 
Replicon accessionNC_010506 
Strand
Start bp4069913 
End bp4070395 
Gene Length483 bp 
Protein Length160 aa 
Translation table11 
GC content49% 
IMG OID641634866 
Productphosphoribosylaminoimidazole carboxylase, catalytic subunit 
Protein accessionYP_001761685 
Protein GI170727659 
COG category[F] Nucleotide transport and metabolism 
COG ID[COG0041] Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase 
TIGRFAM ID[TIGR01162] phosphoribosylaminoimidazole carboxylase, PurE protein 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0094744 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.00118052 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGAAAGTTG GTATCATTAT GGGTTCCAAA TCTGACTGGC CGACCATGGA ACATGCGGCG 
CAAATGTTAG ATACATTTGG TATCGCCTAT GAAACTCGTG TGGTTTCAGC ACATCGAACC
CCGCAGCTAC TCGCTGAATA CTCCTCAACT GCTGCAGAAC GTGGCATAAA AGTCATTATT
GCTGGTGCTG GCGGTGCTGC CCACCTTCCA GGCATGGTTG CTGCTCACAC CAGCTTGCCA
GTTTTGGGCG TGCCAGTTAA ATCTAAAGCC CTCAACGGCA TTGACTCACT ACTCTCTATT
TGCCAAATGC CGAAAGGGGT TGCGGTAGGT ACCTTGGCGA TTGGCGATCC AGGTGCTGCC
AATGCAGGCT TATTAGCCGC GCAAATTCTA GGCTGTCAGC AACCTGAAAT CTTTGCGAAA
ATAGAAGCTT TCCGTCAGGC ACAAACCGAC TCAGTACTTC TTAATCCGGA CCCTGCTATT
TAA
 
Protein sequence
MKVGIIMGSK SDWPTMEHAA QMLDTFGIAY ETRVVSAHRT PQLLAEYSST AAERGIKVII 
AGAGGAAHLP GMVAAHTSLP VLGVPVKSKA LNGIDSLLSI CQMPKGVAVG TLAIGDPGAA
NAGLLAAQIL GCQQPEIFAK IEAFRQAQTD SVLLNPDPAI