| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_3271 |
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| Symbol | lpxD |
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| ID | 6117590 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | - |
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| Start bp | 4012730 |
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| End bp | 4013755 |
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| Gene Length | 1026 bp |
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| Protein Length | 341 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 641634815 |
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| Product | UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase |
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| Protein accession | YP_001761636 |
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| Protein GI | 170727610 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1044] UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase |
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| TIGRFAM ID | [TIGR01853] UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.00000387404 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 5 |
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| Fosmid unclonability p-value | 0.000462611 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAATAGCT ACACGTTAAG AGAGCTTGCA GAAGCTCTCG ACGCTGAGAT TCAAGGTGAT
GAGACACTGG TTATTTCCAG TGTCGCGACA CTGGAAAATG CTGCCCAAGG GCAGCTCTCT
TTTTTAGCGA ACCCTAAATA TCGCGCTCAG CTTGAAACGA CTCAAGCGAG CGCGGTGTTG
ATCTCACCAA AAGCACTTGA TGGCTTTAGT GGTAATGCTC TGGTTTTGAA TGACCCCTAT
GTGGGCTTTG CCAGGGTTGC TCAATTATTA GATACCACCC CTAAGTCAGC TGTTGGTATT
CACGCATCTG CCGTCATTGA TCCAAGTGCA AGCTTAGGTG AAGGTGTGGC TATTGGCGCT
AATGCGGTGA TTGGCGAGAA TGTTATCTTA GGTGAAAACG TTCAAGTGGG TCCTGGTTGT
GTTATCGGTC AAGAGTCTAT TTTAGGATCT GGCACCCGCC TTTGGGCTAA TGTGACTATC
TACCACAATG TTCATCTTGG ACAAGATTGT ATTATTCATT CAGGTGCGGT ACTCGGCTCT
GATGGCTTTG GTTATGCGAA TGAACGTGGT CAGTGGATCA AGATCCCACA AACCGGTGGT
GTTCGTATTG GTAATCGTGT TGAGATAGGT GCCAGTACTA CAGTCGATCG CGGCGCGATT
GAGCATACAG AGATCCACGA TGGTGTTATC CTTGATAACC AAGTACAGAT AGCTCATAAC
GATATTATTG GTGAAAATGT TGCGATAGCA GGTAACTCTA CTATTGCGGG CAGCACTAAG
ATTGGAAAAT ACTGTATTAT AGGTGGAAAT AGCGCGGTTG CTGGCCATCT AACGCTTGCT
GATGGTACCC ATGTTTCCGG TGGGACGAAT GTCACTAGCG AAATTCGTGA GCCAGGTGTT
TATACATCAA CAAGTGTCGC GATGCCAAAT AAATTATGGC GTAGAAATAC CGTTAGATTT
AAACAGTTAG ATGAACTATT TCAACGAGTT AAGAGGCTCG AAAAAAGTGT TCAAACAGAG
GATTAA
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| Protein sequence | MNSYTLRELA EALDAEIQGD ETLVISSVAT LENAAQGQLS FLANPKYRAQ LETTQASAVL
ISPKALDGFS GNALVLNDPY VGFARVAQLL DTTPKSAVGI HASAVIDPSA SLGEGVAIGA
NAVIGENVIL GENVQVGPGC VIGQESILGS GTRLWANVTI YHNVHLGQDC IIHSGAVLGS
DGFGYANERG QWIKIPQTGG VRIGNRVEIG ASTTVDRGAI EHTEIHDGVI LDNQVQIAHN
DIIGENVAIA GNSTIAGSTK IGKYCIIGGN SAVAGHLTLA DGTHVSGGTN VTSEIREPGV
YTSTSVAMPN KLWRRNTVRF KQLDELFQRV KRLEKSVQTE D
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