| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_3189 |
|---|
| Symbol | |
|---|
| ID | 6117508 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella woodyi ATCC 51908 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010506 |
|---|
| Strand | + |
|---|
| Start bp | 3915100 |
|---|
| End bp | 3916308 |
|---|
| Gene Length | 1209 bp |
|---|
| Protein Length | 402 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 641634734 |
|---|
| Product | nucleoside transporter |
|---|
| Protein accession | YP_001761555 |
|---|
| Protein GI | 170727529 |
|---|
| COG category | [F] Nucleotide transport and metabolism |
|---|
| COG ID | [COG1972] Nucleoside permease |
|---|
| TIGRFAM ID | [TIGR00804] nucleoside transporter |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.549787 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAGTTGT TGATTAGCTT GGCCGGGATC TCATTCCTTA TTCTTTGTGG TTGGATATTC
TCTGAAAACC GTCACGCCAT CAAATGGCGC ACCATCATCG GTGCTTTTAT CTTACAAGCA
GGTTTAGCCG CACTTGTTCT CTACGTTCCG ATGGGACAAC AGATACTAGG CTCTGTAAGC
CAAGGTGTCG CTTCTGTACT GGGCTTTGCC GATGAAGGGA TTAAATTCCT CTTTGGCGAT
CTTGCCAGCA ACAGTTTTGT ATTTGCTATC CGAGTACTGC CTCTGGTTAT CTTTATTAGC
GCCCTAATCT CAATGCTCTA CTATTTTGGG ATTATGCAGT GGGTCATTAA GATCATCGGT
GGTGCACTCC AAAAACTGCT TGGCATTAGT CGAGCAGAGT CTCTAGTCAC CACAGGTAAC
ATCTTCCTAA GCCAAGGTGA ATCACCACTA CTTGTTAAAC CCTTTCTACC TAAGATGACT
CGTTCAGAGC TTTTCGCTGT GATGACAGGG GGAATGGCGT CTGTAGCTGG CAGCGTATTA
GGTGGATATG CTGGTTTAGG GGTCGAACTT AAATATCTAA TTGCAGCTAG TTTTATGGCG
GCTCCAGGTA GCCTAATGAT GGCCAAGCTT TTAGTTCCAG AAACCAGTCT GCAAGAGTGT
CAGCAAGAGA TAGATATGAG TAAAAGTGAG CACGGTAACG CCGTCGATGC TCTGGCATCG
GGAGCCATGA ATGGTATGCG CGTCGCCGTT GCTATCGGCA CTATGCTACT CGCCTTTATC
AGTGTCATCG CCATGTTTAA TGCGGGGCTT GAACAAGTTG GCACTTGGTT TAATTTTGAA
GGTGTCACCA TGCAAAGCCT GCTAGGTTAT ATCTTCGCAC CAGTGGCTTT TCTAATAGGC
ATACCTGCAA ACGAGATGAT GCAAGCAGGT GGTTTTATCG GCCAGAAGCT TATTCTCAAT
GAATTTGTGG CATTTATGGA CTTCACTTCG GTCAAGGAGC AACTATCGGC TCATTCACAA
GTGATCATCA CTTTTGCCCT GTGTGGTTTT GCCAATATAG GTTCTATCGC GATTCAACTA
GGCAGCATAG GAGTCATGGC TCCTGAGCGT CGCAGTGATG TTGCAAGCCT TGGCTTTAAA
GCGGTATTGG CTGCGACCTT AGCAAACCTC ATGAGCGCTG TACTTGCTGG GATATTTGTC
TCACTCTAA
|
|---|
| Protein sequence | MQLLISLAGI SFLILCGWIF SENRHAIKWR TIIGAFILQA GLAALVLYVP MGQQILGSVS
QGVASVLGFA DEGIKFLFGD LASNSFVFAI RVLPLVIFIS ALISMLYYFG IMQWVIKIIG
GALQKLLGIS RAESLVTTGN IFLSQGESPL LVKPFLPKMT RSELFAVMTG GMASVAGSVL
GGYAGLGVEL KYLIAASFMA APGSLMMAKL LVPETSLQEC QQEIDMSKSE HGNAVDALAS
GAMNGMRVAV AIGTMLLAFI SVIAMFNAGL EQVGTWFNFE GVTMQSLLGY IFAPVAFLIG
IPANEMMQAG GFIGQKLILN EFVAFMDFTS VKEQLSAHSQ VIITFALCGF ANIGSIAIQL
GSIGVMAPER RSDVASLGFK AVLAATLANL MSAVLAGIFV SL
|
|---|
| |