| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_3164 |
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| Symbol | |
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| ID | 6117483 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | - |
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| Start bp | 3879541 |
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| End bp | 3881523 |
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| Gene Length | 1983 bp |
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| Protein Length | 660 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 641634709 |
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| Product | choline/carnitine/betaine transporter |
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| Protein accession | YP_001761530 |
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| Protein GI | 170727504 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1292] Choline-glycine betaine transporter |
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| TIGRFAM ID | [TIGR00842] choline/carnitine/betaine transport |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 46 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCGATCA AATCCAGTAT AAATCCTCCT GTGTTTTTCT CCTCTGTTTT TCTAATCGCG
TTAATGGTGT TTGTTGGGGC TGTATGGCCT ACTCAAGCAC AAACCGTATT TAAGTCAGCT
CAGTCTTGGT TCGAATTGAA AGCCGGTTGG TTGTATATTC TTGGCGTTGC TGTATTTCTG
ATTTTTATTA TCTTTGTCAT GATGAGCCGA TTTGGAGATA TTAAGTTAGG TCCAGATCAC
GCTGAGCCCG ATTACAGCTA TAAGAGCTGG ATCGCCATGC TGTTTTCAGC AGGCATGGGA
ATTGGCTTGA TGTTCTTCGG TGTAGCAGAG CCTGTTATGC ATTATCTGGC GCCACCTGAT
GCGACACCAG CGTCGATTCA AGCGGCTAAA GATGCCATGA AGATCACCTT CTTCCATTGG
GGAGTCCATG CTTGGGCCAT CTATGCTGTA GTGGCGCTCA GTTTGGCTTA TTTCTCCTAC
CGTCATAAGC TTCCATTGCT TCCACGTAGT GCACTTTACC CATTAATTGG TGAGCGGATC
TACGGTCCAA TCGGTCATGC TGTCGATACC TTTGCGGTAT TAGGTACCAT GTTTGGTGTT
GCGACCTCTT TAGGTTTTGG CGTACTGCAG GTTAACTCAG GTCTTAACTA TCTACTGGGC
GTACCAGTGA ATACTTATAT TCAAGTTGGG CTGATTATTG CCATCTCCTT GATCGCGACA
GTTTCGGTTT TCTCCGGTTT AGATAAAGGG GTGAAACGAC TCAGTGAGTT GAACCTTGGT
TTAGCCGTTT TACTGCTTAT TTTTGTACTG ATATTTGGCC CTACGGTTGA GCTATTGCAA
GCCTTTGTTC AAAATACTGG TAGCTATTTA AGCGATATCG TCGGCAAGAC GTTTAACTTA
TATGCTTATG AGCAGAAAAA TGATTGGATT GGCGGATGGA CGCTACTCTA TTGGGGCTGG
TGGATCTCAT GGTCCCCATT CGTAGGGACA TTTATTGCCC GCGTATCACG TGGACGTACA
ATCAGAGAGT TCCTCGTTGG GGTACTGTTT GTGCCAGCGG CGTTTACTTT CCTCTGGATG
ACGGTATTTG GTAATACGGC TATCGATGCG ATTATGAATC ATGGTGCGAC TTACCTTTCT
GAAGCGGTAT CTTCGGATGT GTCCGTGGCG TTGTTTGTCT TCTTTGAGCA TATGCCGTTG
TCTAATGTGT TATCCACTAT TGCCCTGTGT TTGGTGGTGA CCTTTTTTGT GACATCGTCA
GATTCTGGCT CACTTGTGAT AGACAATCTC ACGTCGGGTG GCGATCATAA CGCTCCAGTT
TGGCAGCGTG TATTTTGGGC CTTACTGCAA GGTGTTGTTG CATCTGTGCT TCTGCTTGCT
GGTGGATTAC AAGCATTACA AACTGTTGCG ATAGCCAGTG CATTACCTTT CTTACTTGTG
ATGCTATTAA TGTGCTTTGG TCTGTATAAA GCTCTAAAAG ATGATTGGCT TAAGATCAAT
AGCGTGCAGT CTCATAATAC CAGTGTTCAG TTCACTAAAA CTGATGTGAA CTGGGAAGAT
CATATTGATG TTCTGGTCTC TCATCCGAGT CAAAAAGATG CGCAAGATTT TCTTGATAAT
GTGGCAACTC CAGCACTAAC TAAGGTGTGT GAGAGCTTTA TTAGTAAAGA GATCCCTGCT
GAAGTGTTGA ATTTTGAGAA TCGAATTCGC TTTGTTATTG CCAATGAAGA GTATGATGAT
TTTGCCTATG GTCTGCGTAT TCGTGCATTT ACTATTATCA ATCCAATCGA GAGTGAGGTT
GATGGTGGTG AGACTGAATA CTACCGTGTT GAGGTGTTCC TTGAACATGG CGGTCAGCAT
TATGATGTAA TGGGCTTTAA TCAAGATCAG ATCTTAGCCG ATGTTGTCAC TCAGTATGAG
AAGTATCTGC ATTATCTGCA TTTAACTAAC TCTGAGTATG TGGGTGACGA GATTAACGCT
TAG
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| Protein sequence | MSIKSSINPP VFFSSVFLIA LMVFVGAVWP TQAQTVFKSA QSWFELKAGW LYILGVAVFL
IFIIFVMMSR FGDIKLGPDH AEPDYSYKSW IAMLFSAGMG IGLMFFGVAE PVMHYLAPPD
ATPASIQAAK DAMKITFFHW GVHAWAIYAV VALSLAYFSY RHKLPLLPRS ALYPLIGERI
YGPIGHAVDT FAVLGTMFGV ATSLGFGVLQ VNSGLNYLLG VPVNTYIQVG LIIAISLIAT
VSVFSGLDKG VKRLSELNLG LAVLLLIFVL IFGPTVELLQ AFVQNTGSYL SDIVGKTFNL
YAYEQKNDWI GGWTLLYWGW WISWSPFVGT FIARVSRGRT IREFLVGVLF VPAAFTFLWM
TVFGNTAIDA IMNHGATYLS EAVSSDVSVA LFVFFEHMPL SNVLSTIALC LVVTFFVTSS
DSGSLVIDNL TSGGDHNAPV WQRVFWALLQ GVVASVLLLA GGLQALQTVA IASALPFLLV
MLLMCFGLYK ALKDDWLKIN SVQSHNTSVQ FTKTDVNWED HIDVLVSHPS QKDAQDFLDN
VATPALTKVC ESFISKEIPA EVLNFENRIR FVIANEEYDD FAYGLRIRAF TIINPIESEV
DGGETEYYRV EVFLEHGGQH YDVMGFNQDQ ILADVVTQYE KYLHYLHLTN SEYVGDEINA
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