Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swoo_3084 |
Symbol | |
ID | 6117399 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella woodyi ATCC 51908 |
Kingdom | Bacteria |
Replicon accession | NC_010506 |
Strand | - |
Start bp | 3778999 |
End bp | 3780207 |
Gene Length | 1209 bp |
Protein Length | 402 aa |
Translation table | 11 |
GC content | 43% |
IMG OID | 641634626 |
Product | porin |
Protein accession | YP_001761450 |
Protein GI | 170727424 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG3203] Outer membrane protein (porin) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 0 |
Plasmid unclonability p-value | 0.000000611786 |
Plasmid hitchhiking | No |
Plasmid clonability | unclonable |
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Fosmid Coverage information |
Num covering fosmid clones | 2 |
Fosmid unclonability p-value | 0.00000268212 |
Fosmid Hitchhiker | No |
Fosmid clonability | decreased coverage |
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Sequence |
Gene sequence | ATGAAAAAAA CGTTAGTAGC ATCGGCTTTA GCAGCCGTTA TATTTGTACC GACAGCTTCA GCTATCGAGA TCTATAAAGA CGACAAGAAC GCAGTAGAGA TCGGTGGTTA TGTCGATGCG CGTATCATCA ATACTCAAGG TGAAACAGAA GTGGTTAACG GTGCTTCTCG CATCAACTTC GGTTTTACTC GCGAAATGAG CGATGGTTGG AAAGCCTTCA CTAAACTTGA GTGGGGCGTT AACCCATTCG GTAATAGTGA GATCGTTTAT AGTAGTGAGA GTAACTTTGA ATCTAAAAGT GGTGACTTCC TAAATAACCG TCTTGGTTAT GTTGGTCTTG GCCATGATAC ATACGGAACG CTAACCATTG GTAAGCAGTG GGGCGCATGG TATGACGTGG TTTATAACAC CAACTATGGT TTTGTATGGG ATGGTAATGC ATCTGGTACT TACACATACA ATAAAGCAGA TGGTGCCGTA AACGGTACTG GTCGCGGTGA TAAAGTAGTT CAATACCGTA ACTCATTCGG TGATGTTAGC TTTGCACTCC AAGCTCAATT AAAAAATGAT ACCTTTTATA CCTGTGAGTC TATATCTGGC TTAGGCACAG ATTGTGAGCA GCGTTGGAAC GACGGTGACG AGTCACAAGA GGTTGACTAC GGTTACACTT ATGGTGGTGC TATCACATAC CAAGCTACCG ACATGTTAAC ACTAACAGCG GGTATTAACC GTGGTGAGTT TGATGTGAGA TTCCATACTG GTGAGCAGAT CACTGCAACA GATCTTATCT ATGGTGTTGG TGCAACTTGG GGCAGCTTCG ATCAAGATGG CTTCTACGCT GCTGCTAACT TCAACAAGAA TGAAAACCAC GATACTGATA ACTTAGGTCG CCTGATCAAA GATTCATACG GTATTGAGTC ACTGTTCTCT TACAAGTTTG AAAACGGCCT ACGTCCATTT ATCTCTTATA ACGTATTAGA TGCTGGCAGT GACTATGTTA TTCAACCAAA CAATGTTGAC CCTAACGATG TGTTTAAGCG TCAATTCGTT GTTGCTGGCC TTCACTATGT TTGGGACTCA AACACAGTAC TTTATGTAGA AGCGCGTAAA GACTTCAGCG ACTTCACAAG TGCAGACAAG GCTCAAGAAG CCAGAATGTC AATCTCTGAA GAAGATGGCG TTGCTATCGG TATTAGATAC ACACTTTAA
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Protein sequence | MKKTLVASAL AAVIFVPTAS AIEIYKDDKN AVEIGGYVDA RIINTQGETE VVNGASRINF GFTREMSDGW KAFTKLEWGV NPFGNSEIVY SSESNFESKS GDFLNNRLGY VGLGHDTYGT LTIGKQWGAW YDVVYNTNYG FVWDGNASGT YTYNKADGAV NGTGRGDKVV QYRNSFGDVS FALQAQLKND TFYTCESISG LGTDCEQRWN DGDESQEVDY GYTYGGAITY QATDMLTLTA GINRGEFDVR FHTGEQITAT DLIYGVGATW GSFDQDGFYA AANFNKNENH DTDNLGRLIK DSYGIESLFS YKFENGLRPF ISYNVLDAGS DYVIQPNNVD PNDVFKRQFV VAGLHYVWDS NTVLYVEARK DFSDFTSADK AQEARMSISE EDGVAIGIRY TL
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