Gene Swoo_3084 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSwoo_3084 
Symbol 
ID6117399 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella woodyi ATCC 51908 
KingdomBacteria 
Replicon accessionNC_010506 
Strand
Start bp3778999 
End bp3780207 
Gene Length1209 bp 
Protein Length402 aa 
Translation table11 
GC content43% 
IMG OID641634626 
Productporin 
Protein accessionYP_001761450 
Protein GI170727424 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG3203] Outer membrane protein (porin) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.000000611786 
Plasmid hitchhikingNo 
Plasmid clonabilityunclonable 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.00000268212 
Fosmid HitchhikerNo 
Fosmid clonabilitydecreased coverage 
 

Sequence

Gene sequence
ATGAAAAAAA CGTTAGTAGC ATCGGCTTTA GCAGCCGTTA TATTTGTACC GACAGCTTCA 
GCTATCGAGA TCTATAAAGA CGACAAGAAC GCAGTAGAGA TCGGTGGTTA TGTCGATGCG
CGTATCATCA ATACTCAAGG TGAAACAGAA GTGGTTAACG GTGCTTCTCG CATCAACTTC
GGTTTTACTC GCGAAATGAG CGATGGTTGG AAAGCCTTCA CTAAACTTGA GTGGGGCGTT
AACCCATTCG GTAATAGTGA GATCGTTTAT AGTAGTGAGA GTAACTTTGA ATCTAAAAGT
GGTGACTTCC TAAATAACCG TCTTGGTTAT GTTGGTCTTG GCCATGATAC ATACGGAACG
CTAACCATTG GTAAGCAGTG GGGCGCATGG TATGACGTGG TTTATAACAC CAACTATGGT
TTTGTATGGG ATGGTAATGC ATCTGGTACT TACACATACA ATAAAGCAGA TGGTGCCGTA
AACGGTACTG GTCGCGGTGA TAAAGTAGTT CAATACCGTA ACTCATTCGG TGATGTTAGC
TTTGCACTCC AAGCTCAATT AAAAAATGAT ACCTTTTATA CCTGTGAGTC TATATCTGGC
TTAGGCACAG ATTGTGAGCA GCGTTGGAAC GACGGTGACG AGTCACAAGA GGTTGACTAC
GGTTACACTT ATGGTGGTGC TATCACATAC CAAGCTACCG ACATGTTAAC ACTAACAGCG
GGTATTAACC GTGGTGAGTT TGATGTGAGA TTCCATACTG GTGAGCAGAT CACTGCAACA
GATCTTATCT ATGGTGTTGG TGCAACTTGG GGCAGCTTCG ATCAAGATGG CTTCTACGCT
GCTGCTAACT TCAACAAGAA TGAAAACCAC GATACTGATA ACTTAGGTCG CCTGATCAAA
GATTCATACG GTATTGAGTC ACTGTTCTCT TACAAGTTTG AAAACGGCCT ACGTCCATTT
ATCTCTTATA ACGTATTAGA TGCTGGCAGT GACTATGTTA TTCAACCAAA CAATGTTGAC
CCTAACGATG TGTTTAAGCG TCAATTCGTT GTTGCTGGCC TTCACTATGT TTGGGACTCA
AACACAGTAC TTTATGTAGA AGCGCGTAAA GACTTCAGCG ACTTCACAAG TGCAGACAAG
GCTCAAGAAG CCAGAATGTC AATCTCTGAA GAAGATGGCG TTGCTATCGG TATTAGATAC
ACACTTTAA
 
Protein sequence
MKKTLVASAL AAVIFVPTAS AIEIYKDDKN AVEIGGYVDA RIINTQGETE VVNGASRINF 
GFTREMSDGW KAFTKLEWGV NPFGNSEIVY SSESNFESKS GDFLNNRLGY VGLGHDTYGT
LTIGKQWGAW YDVVYNTNYG FVWDGNASGT YTYNKADGAV NGTGRGDKVV QYRNSFGDVS
FALQAQLKND TFYTCESISG LGTDCEQRWN DGDESQEVDY GYTYGGAITY QATDMLTLTA
GINRGEFDVR FHTGEQITAT DLIYGVGATW GSFDQDGFYA AANFNKNENH DTDNLGRLIK
DSYGIESLFS YKFENGLRPF ISYNVLDAGS DYVIQPNNVD PNDVFKRQFV VAGLHYVWDS
NTVLYVEARK DFSDFTSADK AQEARMSISE EDGVAIGIRY TL