Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swoo_3082 |
Symbol | |
ID | 6117397 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella woodyi ATCC 51908 |
Kingdom | Bacteria |
Replicon accession | NC_010506 |
Strand | - |
Start bp | 3772091 |
End bp | 3774988 |
Gene Length | 2898 bp |
Protein Length | 965 aa |
Translation table | 11 |
GC content | 43% |
IMG OID | 641634624 |
Product | TonB-dependent receptor |
Protein accession | YP_001761448 |
Protein GI | 170727422 |
COG category | [H] Coenzyme transport and metabolism |
COG ID | [COG4206] Outer membrane cobalamin receptor protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 0 |
Plasmid unclonability p-value | 0.0000538952 |
Plasmid hitchhiking | No |
Plasmid clonability | unclonable |
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Fosmid Coverage information |
Num covering fosmid clones | 2 |
Fosmid unclonability p-value | 0.0000060064 |
Fosmid Hitchhiker | No |
Fosmid clonability | decreased coverage |
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Sequence |
Gene sequence | ATGTATAAAA ATAGCTTACT CGCTAATTCT GTGCGTTTTG CACTAATTAG TGGTGCAGCA GCGGCGGCGT TTACTGCACC AGCTGTTTAT GCGGCAGATG AAGAAACTGT AGAGCGTATA GAGGTGACTG GTTCTCGAAT TAAGAGAACT GACATGGAAG GTGCAAATCC GGTCACAACC ATTGATGCTG CTTCGATTGA GAAGATGAGC GTTAATAACG TTGGTGATCT TCTTCAGAAT CTAACATCAT CTGCTGGTGC TGCAACTAAT ACTCAAACTA ACAACGGTGG TGATTCAAGT ACTCGTTTTT CACTGCGTGG TATTGGTTCT GAACGTACCC TCGTTTTAAT TAATGGCCGT CGTGTTGTTG CTGGTGGTGG AGGGGCGAAC TCTTCAGTGG ATTTAAATAC CATTCCAACT GCGATTGTTA AGCGCGTTGA AATTTTGAAA GATGGCGCAT CTGCGACATA TGGTTCAGAC GCTATTGCTG GTGTTGTGAA CATCATTACA AAAGATGATT TTGAAGGGTT TGAGGTTAAG CTAAATTATG GCGGTAGTGA TAAAGGTGAT GCCGTCACTA AGGGCGTCGA TGTCACATTT GGTGCTGCGA GTGATCGAGG TAATGTTGTT GTTGCTCTAG GTTATAGCGA TCAAGGCGAT GCATTCATGG GAGATCGTGA TTTTTCTGAG TTTGAGTTAA GAGCTTATGA AGATGGTCAT ACTGAGCCTG GTGGGTCTTC TGCGCCACCA TGGGTTAACG CAAATACTGC TGATGGCCGA GTTACTCGTG GTCCAGAGTT TGGTGATTGG AGACCGTATA GCGGCGCTAC TGATTCATAC AACTATAACC CAGTAAATTA CCTTCAAACG CCTAGTAAGC GCCGTTACGC TTCAGTTTTC TCAAATTATA CTTTGGGTGA GTTTGGTTTC TTAGGTGAAG TAAACTCATT TGCTGAGGCA AGTTATGTTC AGACTACGGG TAATCGACTC ATTGCTCCTG AGCCATTAGC ACCTTTAATT TTCTTTGGTT CAGCAGCACC TTATTCACCA AATAACTATT ACAATCAGAA AATGGGACCG AAAGATGCAA ACGGTAATGC CTATGTGATT GATGACTGGC GTCGTCGTAT GCTAGAAACT GGTGGTCGAG CTAACGAGCG TGATTATAAA ACATTCCGTA CAGCTGTAGG ATTTAATGGT GTTTTAGAAA ACGGCTGGGA CTGGGAAGTT TCATATGTAT GGGGTCAAAG CGACTCTGTT GAAAAAGCAG CAGGTTACTT TAATTTAGAT CGCGTTGCAG AAGCAGTAGG TCCAACTGGG TGGTTAGATG CCAATGGAAA CTTAATTGTT GATGGTAACG GTGATGCTGT TGTCGATGCC AACGGTTCTC AGCTGGTATG TTTAGATGCT GATGGTGGCA CTATTGATGG TTGTGTTCCG TTAAATATCT TTGGAACTCC AGGAACGGCA GATGAGATCA CTCCAGAGAT GCTGCAATAT ATCTCTGGGG ATTACAATAC AACTGAGACG GGTCAGAACA AGCAAGAAGT TCTATCTGCA ATTGTTTCGG GCGACCTGTT TGATTTGCCA GCTGGCTCTG TAGGTTTTGC TGCTGGTTGG GAGCAGAGAA AAGAGTCTGG CTCATACACT CCTGATTCTC TTATTCTCCA AGGTATCACC ACTGCAGGCT CTGCGGTTGG TACCAGTGGT GGCTATGATG TACAAGAGTT CTTCGGTGAG TTGATTGTGC CTATTTTGGC TGATGCACCT ATGGCACATA TGCTTGATTT TGAAGCGGCT ATGCGCTATT CGGATTATAG TACTTTTGGT ACTAATACCA GTGGTAAGTT AGGTATCAAA TGGATGCCAG TAGAGACTCT GATGGTGCGT GCTACCTTAT CTGAAGCTTT CCGAGCACCA ACAACATCAG ACCTCTTTGG GGGAGCATCA GTAGGATTCC CAGAAGCAAT CGATCCTTGT GACCGTTTTG CATATGACTC TGATGCAGCT TATGCAGCTG TTATTGCATC TCCTCAGTGG GCTAATTGTA CTGGAACTGG TGTACCTGTT GCAGGTTATA ACTCTGGTGG TGTAGAGCAA ATTCCAACAA ACGGGGGCGG TTCAGACAAC TGGGGTGGTA CTGAGAATCT AACTCCAGAA ACTGCTGATG TATTGACTGT TGGTGTTGTG TTTAATCCAG ATTTCATTGA AAACTTCTCA ATGAGTGTCG ATTATTGGAA GATTGAGCTA GAGAATGCGA TCTCTACAGT TGGTACACAA ACTCGTTTAG ATGGTTGCTT TAACTCTGGT GAGTACTGTA ATACTATCAC TCGCTTCGGT GCTACTAGCC CTGCTGCTGG CGGTATTATT ACCGTAGATA ACTATACTGT GAATGTTGGT GGAATCGATA CGGCAGGTAT TGATTATGAT TTACGTTATA CCTTCGAATC AGGTTTCGGG GATTGGGGCC TAGGTTTAGA TGGTACATAT CTACTTGAGT ATGACAAGAT GCTTGCTGAT GGATCTGTAA TTGATCATGT TGGTCGTTTT GAGTCTAACC ATGATGGTAT GTTTGCTAAA CTCAAAACAA ACTTCACTGT TAACTGGTCT ATCTCAGATT TTGATACAAG TTTAATCACT CGTTATATTA GTGGTGTTGT TGAAACTGAG TCTGGTTGGT GGACAGATCC TTTTGAAAGA GATGTAGACT CAAATATAGT TGTTGATTTT CAGACTAATT ATGCTGCAAC TGAGCACTTA ACGATCACTG CTGGTGTAGA TAATTTATTT GATGAACAAC CACCTTTTGT TTACTCAGCA TTTGGAGCAA ACACTGATGT GTCGACTTAC GATGTTATTG GTCGAACTGT TTACTTAAGA GCTGGGATTA AGTTCTAA
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Protein sequence | MYKNSLLANS VRFALISGAA AAAFTAPAVY AADEETVERI EVTGSRIKRT DMEGANPVTT IDAASIEKMS VNNVGDLLQN LTSSAGAATN TQTNNGGDSS TRFSLRGIGS ERTLVLINGR RVVAGGGGAN SSVDLNTIPT AIVKRVEILK DGASATYGSD AIAGVVNIIT KDDFEGFEVK LNYGGSDKGD AVTKGVDVTF GAASDRGNVV VALGYSDQGD AFMGDRDFSE FELRAYEDGH TEPGGSSAPP WVNANTADGR VTRGPEFGDW RPYSGATDSY NYNPVNYLQT PSKRRYASVF SNYTLGEFGF LGEVNSFAEA SYVQTTGNRL IAPEPLAPLI FFGSAAPYSP NNYYNQKMGP KDANGNAYVI DDWRRRMLET GGRANERDYK TFRTAVGFNG VLENGWDWEV SYVWGQSDSV EKAAGYFNLD RVAEAVGPTG WLDANGNLIV DGNGDAVVDA NGSQLVCLDA DGGTIDGCVP LNIFGTPGTA DEITPEMLQY ISGDYNTTET GQNKQEVLSA IVSGDLFDLP AGSVGFAAGW EQRKESGSYT PDSLILQGIT TAGSAVGTSG GYDVQEFFGE LIVPILADAP MAHMLDFEAA MRYSDYSTFG TNTSGKLGIK WMPVETLMVR ATLSEAFRAP TTSDLFGGAS VGFPEAIDPC DRFAYDSDAA YAAVIASPQW ANCTGTGVPV AGYNSGGVEQ IPTNGGGSDN WGGTENLTPE TADVLTVGVV FNPDFIENFS MSVDYWKIEL ENAISTVGTQ TRLDGCFNSG EYCNTITRFG ATSPAAGGII TVDNYTVNVG GIDTAGIDYD LRYTFESGFG DWGLGLDGTY LLEYDKMLAD GSVIDHVGRF ESNHDGMFAK LKTNFTVNWS ISDFDTSLIT RYISGVVETE SGWWTDPFER DVDSNIVVDF QTNYAATEHL TITAGVDNLF DEQPPFVYSA FGANTDVSTY DVIGRTVYLR AGIKF
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