Gene Swoo_3082 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSwoo_3082 
Symbol 
ID6117397 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella woodyi ATCC 51908 
KingdomBacteria 
Replicon accessionNC_010506 
Strand
Start bp3772091 
End bp3774988 
Gene Length2898 bp 
Protein Length965 aa 
Translation table11 
GC content43% 
IMG OID641634624 
ProductTonB-dependent receptor 
Protein accessionYP_001761448 
Protein GI170727422 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG4206] Outer membrane cobalamin receptor protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0000538952 
Plasmid hitchhikingNo 
Plasmid clonabilityunclonable 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0000060064 
Fosmid HitchhikerNo 
Fosmid clonabilitydecreased coverage 
 

Sequence

Gene sequence
ATGTATAAAA ATAGCTTACT CGCTAATTCT GTGCGTTTTG CACTAATTAG TGGTGCAGCA 
GCGGCGGCGT TTACTGCACC AGCTGTTTAT GCGGCAGATG AAGAAACTGT AGAGCGTATA
GAGGTGACTG GTTCTCGAAT TAAGAGAACT GACATGGAAG GTGCAAATCC GGTCACAACC
ATTGATGCTG CTTCGATTGA GAAGATGAGC GTTAATAACG TTGGTGATCT TCTTCAGAAT
CTAACATCAT CTGCTGGTGC TGCAACTAAT ACTCAAACTA ACAACGGTGG TGATTCAAGT
ACTCGTTTTT CACTGCGTGG TATTGGTTCT GAACGTACCC TCGTTTTAAT TAATGGCCGT
CGTGTTGTTG CTGGTGGTGG AGGGGCGAAC TCTTCAGTGG ATTTAAATAC CATTCCAACT
GCGATTGTTA AGCGCGTTGA AATTTTGAAA GATGGCGCAT CTGCGACATA TGGTTCAGAC
GCTATTGCTG GTGTTGTGAA CATCATTACA AAAGATGATT TTGAAGGGTT TGAGGTTAAG
CTAAATTATG GCGGTAGTGA TAAAGGTGAT GCCGTCACTA AGGGCGTCGA TGTCACATTT
GGTGCTGCGA GTGATCGAGG TAATGTTGTT GTTGCTCTAG GTTATAGCGA TCAAGGCGAT
GCATTCATGG GAGATCGTGA TTTTTCTGAG TTTGAGTTAA GAGCTTATGA AGATGGTCAT
ACTGAGCCTG GTGGGTCTTC TGCGCCACCA TGGGTTAACG CAAATACTGC TGATGGCCGA
GTTACTCGTG GTCCAGAGTT TGGTGATTGG AGACCGTATA GCGGCGCTAC TGATTCATAC
AACTATAACC CAGTAAATTA CCTTCAAACG CCTAGTAAGC GCCGTTACGC TTCAGTTTTC
TCAAATTATA CTTTGGGTGA GTTTGGTTTC TTAGGTGAAG TAAACTCATT TGCTGAGGCA
AGTTATGTTC AGACTACGGG TAATCGACTC ATTGCTCCTG AGCCATTAGC ACCTTTAATT
TTCTTTGGTT CAGCAGCACC TTATTCACCA AATAACTATT ACAATCAGAA AATGGGACCG
AAAGATGCAA ACGGTAATGC CTATGTGATT GATGACTGGC GTCGTCGTAT GCTAGAAACT
GGTGGTCGAG CTAACGAGCG TGATTATAAA ACATTCCGTA CAGCTGTAGG ATTTAATGGT
GTTTTAGAAA ACGGCTGGGA CTGGGAAGTT TCATATGTAT GGGGTCAAAG CGACTCTGTT
GAAAAAGCAG CAGGTTACTT TAATTTAGAT CGCGTTGCAG AAGCAGTAGG TCCAACTGGG
TGGTTAGATG CCAATGGAAA CTTAATTGTT GATGGTAACG GTGATGCTGT TGTCGATGCC
AACGGTTCTC AGCTGGTATG TTTAGATGCT GATGGTGGCA CTATTGATGG TTGTGTTCCG
TTAAATATCT TTGGAACTCC AGGAACGGCA GATGAGATCA CTCCAGAGAT GCTGCAATAT
ATCTCTGGGG ATTACAATAC AACTGAGACG GGTCAGAACA AGCAAGAAGT TCTATCTGCA
ATTGTTTCGG GCGACCTGTT TGATTTGCCA GCTGGCTCTG TAGGTTTTGC TGCTGGTTGG
GAGCAGAGAA AAGAGTCTGG CTCATACACT CCTGATTCTC TTATTCTCCA AGGTATCACC
ACTGCAGGCT CTGCGGTTGG TACCAGTGGT GGCTATGATG TACAAGAGTT CTTCGGTGAG
TTGATTGTGC CTATTTTGGC TGATGCACCT ATGGCACATA TGCTTGATTT TGAAGCGGCT
ATGCGCTATT CGGATTATAG TACTTTTGGT ACTAATACCA GTGGTAAGTT AGGTATCAAA
TGGATGCCAG TAGAGACTCT GATGGTGCGT GCTACCTTAT CTGAAGCTTT CCGAGCACCA
ACAACATCAG ACCTCTTTGG GGGAGCATCA GTAGGATTCC CAGAAGCAAT CGATCCTTGT
GACCGTTTTG CATATGACTC TGATGCAGCT TATGCAGCTG TTATTGCATC TCCTCAGTGG
GCTAATTGTA CTGGAACTGG TGTACCTGTT GCAGGTTATA ACTCTGGTGG TGTAGAGCAA
ATTCCAACAA ACGGGGGCGG TTCAGACAAC TGGGGTGGTA CTGAGAATCT AACTCCAGAA
ACTGCTGATG TATTGACTGT TGGTGTTGTG TTTAATCCAG ATTTCATTGA AAACTTCTCA
ATGAGTGTCG ATTATTGGAA GATTGAGCTA GAGAATGCGA TCTCTACAGT TGGTACACAA
ACTCGTTTAG ATGGTTGCTT TAACTCTGGT GAGTACTGTA ATACTATCAC TCGCTTCGGT
GCTACTAGCC CTGCTGCTGG CGGTATTATT ACCGTAGATA ACTATACTGT GAATGTTGGT
GGAATCGATA CGGCAGGTAT TGATTATGAT TTACGTTATA CCTTCGAATC AGGTTTCGGG
GATTGGGGCC TAGGTTTAGA TGGTACATAT CTACTTGAGT ATGACAAGAT GCTTGCTGAT
GGATCTGTAA TTGATCATGT TGGTCGTTTT GAGTCTAACC ATGATGGTAT GTTTGCTAAA
CTCAAAACAA ACTTCACTGT TAACTGGTCT ATCTCAGATT TTGATACAAG TTTAATCACT
CGTTATATTA GTGGTGTTGT TGAAACTGAG TCTGGTTGGT GGACAGATCC TTTTGAAAGA
GATGTAGACT CAAATATAGT TGTTGATTTT CAGACTAATT ATGCTGCAAC TGAGCACTTA
ACGATCACTG CTGGTGTAGA TAATTTATTT GATGAACAAC CACCTTTTGT TTACTCAGCA
TTTGGAGCAA ACACTGATGT GTCGACTTAC GATGTTATTG GTCGAACTGT TTACTTAAGA
GCTGGGATTA AGTTCTAA
 
Protein sequence
MYKNSLLANS VRFALISGAA AAAFTAPAVY AADEETVERI EVTGSRIKRT DMEGANPVTT 
IDAASIEKMS VNNVGDLLQN LTSSAGAATN TQTNNGGDSS TRFSLRGIGS ERTLVLINGR
RVVAGGGGAN SSVDLNTIPT AIVKRVEILK DGASATYGSD AIAGVVNIIT KDDFEGFEVK
LNYGGSDKGD AVTKGVDVTF GAASDRGNVV VALGYSDQGD AFMGDRDFSE FELRAYEDGH
TEPGGSSAPP WVNANTADGR VTRGPEFGDW RPYSGATDSY NYNPVNYLQT PSKRRYASVF
SNYTLGEFGF LGEVNSFAEA SYVQTTGNRL IAPEPLAPLI FFGSAAPYSP NNYYNQKMGP
KDANGNAYVI DDWRRRMLET GGRANERDYK TFRTAVGFNG VLENGWDWEV SYVWGQSDSV
EKAAGYFNLD RVAEAVGPTG WLDANGNLIV DGNGDAVVDA NGSQLVCLDA DGGTIDGCVP
LNIFGTPGTA DEITPEMLQY ISGDYNTTET GQNKQEVLSA IVSGDLFDLP AGSVGFAAGW
EQRKESGSYT PDSLILQGIT TAGSAVGTSG GYDVQEFFGE LIVPILADAP MAHMLDFEAA
MRYSDYSTFG TNTSGKLGIK WMPVETLMVR ATLSEAFRAP TTSDLFGGAS VGFPEAIDPC
DRFAYDSDAA YAAVIASPQW ANCTGTGVPV AGYNSGGVEQ IPTNGGGSDN WGGTENLTPE
TADVLTVGVV FNPDFIENFS MSVDYWKIEL ENAISTVGTQ TRLDGCFNSG EYCNTITRFG
ATSPAAGGII TVDNYTVNVG GIDTAGIDYD LRYTFESGFG DWGLGLDGTY LLEYDKMLAD
GSVIDHVGRF ESNHDGMFAK LKTNFTVNWS ISDFDTSLIT RYISGVVETE SGWWTDPFER
DVDSNIVVDF QTNYAATEHL TITAGVDNLF DEQPPFVYSA FGANTDVSTY DVIGRTVYLR
AGIKF