Gene Swoo_3009 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSwoo_3009 
Symbol 
ID6117324 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella woodyi ATCC 51908 
KingdomBacteria 
Replicon accessionNC_010506 
Strand
Start bp3686060 
End bp3688150 
Gene Length2091 bp 
Protein Length696 aa 
Translation table11 
GC content46% 
IMG OID641634551 
ProducttRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC 
Protein accessionYP_001761375 
Protein GI170727349 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0665] Glycine/D-amino acid oxidases (deaminating) 
TIGRFAM ID[TIGR03197] tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones17 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCTAATA TGCGACGCAG AGTAAATTCA TTGGCCCAAG AATGTGAGAA AAATACCCAA 
ATGAACCAAG AAACAGCTAA TTTCAGCGAA TTTTACCGTT TATTGTCCAA CATAGCTGTA
GGAAAACAGA GCCTAACCTT TGGTCAATTG GGCCTTGGCT CTGTCGAGCA GCTTTTAGCC
GTTCACTCTT GGCTATCATC CGCTCCCACT TCTGTGCGTA TTAAACTTAA GGTATTCGAA
GCCCAACTCG ATACTCTGCC TCTATTTATC TCACAACTTA GCAGCTACAC ACCTCCTAGT
TCGAAGCAAG GTTCATTTAT TCAAACACTG ACAGAGGCAG ATCCTATCGA AATATTAGGC
TGTCAAAGGT TAATATTTGA TGATGGCCGA TTTGTTATCG ATCTCTACCT AAACTCCCCA
ATCGCCTCAC TTAAGAGTAT GCGGCTGCCA ACTTGTGATG GTTCAGATGA TGACAAAAGC
CCCCTTTTCG ACCTCTGGAC CATCAGCCAA ACTAACTCAA ACAGAGTGGA AAGTGGTATG
GAGCAAGAGA TAAGTCAGGC TTTGTTATGG CAGGTGGCAA AGGTAAGCCA AGATAGTGCA
CCAGTTTATA ACTTCAACCT TAAACAAGGT AAAGAGATTC GCCAACTGTG CCAAAAAACA
GGTTTTTCAC TTATCTCATA CAGATCTCAA AATGAAGAGA TGACACCAAA ACTCACTTCG
GACTTAAGTA GCTTAGATAC TCAGATCTGT CTGCAGGAGC GAAAAGCCCT TAGGCATGCA
CAAGCTCAAG ATTCACTCTA TACACCAGTG GGTCAAGCAA GCAGTGAAAC AGATTCAGAG
TCGGATACTT TTGCCATTAT TGGAGGCGGC GTAGCCAGCG CGCACCTAGC CCTCTCTTTA
GCACAGCGCA ATAAAACCGT GCGCCTTTTT TGCAACGACT CATCACTGGC TCAACAAGCT
TCAGGGAACA AACAGGGCGC GGTTTATCCT CTACTCACCC CAGATAATGG CCACTTAAGC
CATTATTATC AGCAAGGTTA CCTCTTCAGT CGTCGAAGAC TGCAATCATT AATTAAGGAT
GGGTTTAAGG TGGGCTACGA TTTTTGCGGC GTACTGCAAA CTGGTTTTGA TCAACGTAGC
AGCGCACGGT TGGAAAAGAT AATCACGGCG CAGCCCTGGA ATAAGCAGAT AGCCCATGGC
GTTGATCGTC ATGAGTCGAG TAACCTCGCA GGCATAGATA TCGATAAGGC GGGCATATTT
TATCCTCTTG GTGGCTGGAT ATGCCCCCAT GAGTTTACTC AAGCAGCTTT TGATAAAGCG
TCTCAGCTTA GTGATGTGAG TGCCCATTTT AATACCGATA TTAAGCGGAT CGAGCAAAGA
GAGGGAAAGT GGTACCTGCA TAAAACCACT GTGAATACAG GAGGTGAGCA GACATTTGGT
CCATTTAACA CCTTAATTCT CGCCAACGGT CAGGGGCTGA ATCAATTTAA TCAAAGCAAA
CAACTGGCCG CTACAGGCTT CAGAGGTCAA GTGAGCCATA TTCCTGCTCG AAATGAACTA
CTGAAACTGA ATACAGTGCT CTGCTCCCAT GGTTACCTTA CTCCTCAAAA TGACGGCGTT
CACTGCACAG GCGCTAGCTA TATAAAAAAC CCTGAACACC TCGACTACAG CCCAAGCGAA
CAGGCCGAGA ACCTTGAGAA AGTGAAGCAA AGTTACCTAG GAAAAGCCTG GACTGAAGAT
GTTGATATTA GCGATCATAG CGCCAGAGTC GGCGTAAGAA TGGTGACCCG AGATCATGCA
CCTATGATGG GATGCGCCCC AGATTTTGAT GTCATATCGT TAAACTACCA AAACCACCAG
CATACTAAAG AGAGCATCAA ATATTGGAGA GAAACACCTG CACCAATCCA TCAAGGCCTA
TTTATTTTAG GTGGACTTGG CTCTCGTGGG ATAACCTCTG GTCCCCTTGC GGCAGAAGCG
TTAGCAGCGC AGCTTTGCGG TGAGATAATC CCACTCGATA ACGCGACACT GGAACTGCTT
AACCCTAATC GGATGTGGAT GCGTAAACTC ATCAAGGGCA AAGCCCTTTA A
 
Protein sequence
MPNMRRRVNS LAQECEKNTQ MNQETANFSE FYRLLSNIAV GKQSLTFGQL GLGSVEQLLA 
VHSWLSSAPT SVRIKLKVFE AQLDTLPLFI SQLSSYTPPS SKQGSFIQTL TEADPIEILG
CQRLIFDDGR FVIDLYLNSP IASLKSMRLP TCDGSDDDKS PLFDLWTISQ TNSNRVESGM
EQEISQALLW QVAKVSQDSA PVYNFNLKQG KEIRQLCQKT GFSLISYRSQ NEEMTPKLTS
DLSSLDTQIC LQERKALRHA QAQDSLYTPV GQASSETDSE SDTFAIIGGG VASAHLALSL
AQRNKTVRLF CNDSSLAQQA SGNKQGAVYP LLTPDNGHLS HYYQQGYLFS RRRLQSLIKD
GFKVGYDFCG VLQTGFDQRS SARLEKIITA QPWNKQIAHG VDRHESSNLA GIDIDKAGIF
YPLGGWICPH EFTQAAFDKA SQLSDVSAHF NTDIKRIEQR EGKWYLHKTT VNTGGEQTFG
PFNTLILANG QGLNQFNQSK QLAATGFRGQ VSHIPARNEL LKLNTVLCSH GYLTPQNDGV
HCTGASYIKN PEHLDYSPSE QAENLEKVKQ SYLGKAWTED VDISDHSARV GVRMVTRDHA
PMMGCAPDFD VISLNYQNHQ HTKESIKYWR ETPAPIHQGL FILGGLGSRG ITSGPLAAEA
LAAQLCGEII PLDNATLELL NPNRMWMRKL IKGKAL