Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swoo_3009 |
Symbol | |
ID | 6117324 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella woodyi ATCC 51908 |
Kingdom | Bacteria |
Replicon accession | NC_010506 |
Strand | + |
Start bp | 3686060 |
End bp | 3688150 |
Gene Length | 2091 bp |
Protein Length | 696 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 641634551 |
Product | tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC |
Protein accession | YP_001761375 |
Protein GI | 170727349 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0665] Glycine/D-amino acid oxidases (deaminating) |
TIGRFAM ID | [TIGR03197] tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 17 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCCTAATA TGCGACGCAG AGTAAATTCA TTGGCCCAAG AATGTGAGAA AAATACCCAA ATGAACCAAG AAACAGCTAA TTTCAGCGAA TTTTACCGTT TATTGTCCAA CATAGCTGTA GGAAAACAGA GCCTAACCTT TGGTCAATTG GGCCTTGGCT CTGTCGAGCA GCTTTTAGCC GTTCACTCTT GGCTATCATC CGCTCCCACT TCTGTGCGTA TTAAACTTAA GGTATTCGAA GCCCAACTCG ATACTCTGCC TCTATTTATC TCACAACTTA GCAGCTACAC ACCTCCTAGT TCGAAGCAAG GTTCATTTAT TCAAACACTG ACAGAGGCAG ATCCTATCGA AATATTAGGC TGTCAAAGGT TAATATTTGA TGATGGCCGA TTTGTTATCG ATCTCTACCT AAACTCCCCA ATCGCCTCAC TTAAGAGTAT GCGGCTGCCA ACTTGTGATG GTTCAGATGA TGACAAAAGC CCCCTTTTCG ACCTCTGGAC CATCAGCCAA ACTAACTCAA ACAGAGTGGA AAGTGGTATG GAGCAAGAGA TAAGTCAGGC TTTGTTATGG CAGGTGGCAA AGGTAAGCCA AGATAGTGCA CCAGTTTATA ACTTCAACCT TAAACAAGGT AAAGAGATTC GCCAACTGTG CCAAAAAACA GGTTTTTCAC TTATCTCATA CAGATCTCAA AATGAAGAGA TGACACCAAA ACTCACTTCG GACTTAAGTA GCTTAGATAC TCAGATCTGT CTGCAGGAGC GAAAAGCCCT TAGGCATGCA CAAGCTCAAG ATTCACTCTA TACACCAGTG GGTCAAGCAA GCAGTGAAAC AGATTCAGAG TCGGATACTT TTGCCATTAT TGGAGGCGGC GTAGCCAGCG CGCACCTAGC CCTCTCTTTA GCACAGCGCA ATAAAACCGT GCGCCTTTTT TGCAACGACT CATCACTGGC TCAACAAGCT TCAGGGAACA AACAGGGCGC GGTTTATCCT CTACTCACCC CAGATAATGG CCACTTAAGC CATTATTATC AGCAAGGTTA CCTCTTCAGT CGTCGAAGAC TGCAATCATT AATTAAGGAT GGGTTTAAGG TGGGCTACGA TTTTTGCGGC GTACTGCAAA CTGGTTTTGA TCAACGTAGC AGCGCACGGT TGGAAAAGAT AATCACGGCG CAGCCCTGGA ATAAGCAGAT AGCCCATGGC GTTGATCGTC ATGAGTCGAG TAACCTCGCA GGCATAGATA TCGATAAGGC GGGCATATTT TATCCTCTTG GTGGCTGGAT ATGCCCCCAT GAGTTTACTC AAGCAGCTTT TGATAAAGCG TCTCAGCTTA GTGATGTGAG TGCCCATTTT AATACCGATA TTAAGCGGAT CGAGCAAAGA GAGGGAAAGT GGTACCTGCA TAAAACCACT GTGAATACAG GAGGTGAGCA GACATTTGGT CCATTTAACA CCTTAATTCT CGCCAACGGT CAGGGGCTGA ATCAATTTAA TCAAAGCAAA CAACTGGCCG CTACAGGCTT CAGAGGTCAA GTGAGCCATA TTCCTGCTCG AAATGAACTA CTGAAACTGA ATACAGTGCT CTGCTCCCAT GGTTACCTTA CTCCTCAAAA TGACGGCGTT CACTGCACAG GCGCTAGCTA TATAAAAAAC CCTGAACACC TCGACTACAG CCCAAGCGAA CAGGCCGAGA ACCTTGAGAA AGTGAAGCAA AGTTACCTAG GAAAAGCCTG GACTGAAGAT GTTGATATTA GCGATCATAG CGCCAGAGTC GGCGTAAGAA TGGTGACCCG AGATCATGCA CCTATGATGG GATGCGCCCC AGATTTTGAT GTCATATCGT TAAACTACCA AAACCACCAG CATACTAAAG AGAGCATCAA ATATTGGAGA GAAACACCTG CACCAATCCA TCAAGGCCTA TTTATTTTAG GTGGACTTGG CTCTCGTGGG ATAACCTCTG GTCCCCTTGC GGCAGAAGCG TTAGCAGCGC AGCTTTGCGG TGAGATAATC CCACTCGATA ACGCGACACT GGAACTGCTT AACCCTAATC GGATGTGGAT GCGTAAACTC ATCAAGGGCA AAGCCCTTTA A
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Protein sequence | MPNMRRRVNS LAQECEKNTQ MNQETANFSE FYRLLSNIAV GKQSLTFGQL GLGSVEQLLA VHSWLSSAPT SVRIKLKVFE AQLDTLPLFI SQLSSYTPPS SKQGSFIQTL TEADPIEILG CQRLIFDDGR FVIDLYLNSP IASLKSMRLP TCDGSDDDKS PLFDLWTISQ TNSNRVESGM EQEISQALLW QVAKVSQDSA PVYNFNLKQG KEIRQLCQKT GFSLISYRSQ NEEMTPKLTS DLSSLDTQIC LQERKALRHA QAQDSLYTPV GQASSETDSE SDTFAIIGGG VASAHLALSL AQRNKTVRLF CNDSSLAQQA SGNKQGAVYP LLTPDNGHLS HYYQQGYLFS RRRLQSLIKD GFKVGYDFCG VLQTGFDQRS SARLEKIITA QPWNKQIAHG VDRHESSNLA GIDIDKAGIF YPLGGWICPH EFTQAAFDKA SQLSDVSAHF NTDIKRIEQR EGKWYLHKTT VNTGGEQTFG PFNTLILANG QGLNQFNQSK QLAATGFRGQ VSHIPARNEL LKLNTVLCSH GYLTPQNDGV HCTGASYIKN PEHLDYSPSE QAENLEKVKQ SYLGKAWTED VDISDHSARV GVRMVTRDHA PMMGCAPDFD VISLNYQNHQ HTKESIKYWR ETPAPIHQGL FILGGLGSRG ITSGPLAAEA LAAQLCGEII PLDNATLELL NPNRMWMRKL IKGKAL
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