| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_2920 |
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| Symbol | |
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| ID | 6117235 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | + |
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| Start bp | 3571737 |
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| End bp | 3573608 |
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| Gene Length | 1872 bp |
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| Protein Length | 623 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 641634464 |
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| Product | sensor diguanylate cyclase |
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| Protein accession | YP_001761288 |
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| Protein GI | 170727262 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGCGTCTAA TTTCCATTAA TTCACGGCAG ATATCAAAGC GTGTATTATT GACAGGCATC
ATGTTTTTTC TCTATGGCCT TCTATATACA TCAACTCTTC ATGCCGCCTC ACCGGACGCA
ATAGACATAT CGACACATCA TCAGGGGCAA ACAACTGGGG ACAATTACTA CTACCTCGTT
GATAAAAGTA ATGCTCTGTC ACTGAGTGAT GTTATCGCAA ATTCAAGCTG GACAAAATCT
GAGCCTAATA TCACCAACCG GGGCTTTACC TCCGCCAGCT CTTGGATGAA GTTCACCCTA
AAAAACAGTA GCCAAACTAA CTTCAATATT ATCTTAGAGT ATGTTGAAGC TTCTGTAGGC
AGCATAGATG TCTACCATAG AAGACTAGGT TCTGATGAGG AGTTCACCCA CGCTAACTTT
ACTTTTTCAG CACCTGTCGA AGCACGAGAA GTCAGTTTTT ATCGTCCAGC TTTTGAACTT
AGCCTGCCCT ATCTCGAATC CCATGAGGTC TATGTCAGAA TTTTCCCTGG TGATGAGTTC
CCTATGCATA GCTTTACTGC CATGAGGATA TGGGATCAAG CCAGCTTCTA TCTTGCAACG
CATATCGAGC TGACCTTCCT CGTTATTTTA TTATGCACTG AACTCTTTAT GGGCTTTGCC
ACCCTACTAG TCTTCTTTAT CTCACGGGAT AAGATGTTCC TCTACTACTC AATTTTTGCT
TTCTCAATCG CCTCTCTTTT TGCTTCTCTA AGTGGTGTTT GGGGCTACTT TTTCGCCCGA
GAAAGCTACC AACTCTGGAT GGTTGTACTT CAGATAAGCT TAAGTCAGAT AGCGGCAATC
TGGTTTGTCA GATGTTTTCT GAATATTCGC CAGATCTCAA AAATGATAGA CAACGCCCTG
TTAGTGGCAA TTGCGGTCTC AATAGCTGGC GTCATAATTA ACCTATCAGG CTACCCTTAT
TACCCAAGAT TGATCATCGA TAACATTGCA TTTCTCTATA TTTTATTGGT GCCAATCGGC
CTATTTGCAT GGAAAAAGGA TGTTCCCCAC GCAGGTCTTT TCACCTTTAG TTGGGCTGTA
TTCATCTTAG GCATGCTCAC CGCCTCTTTG CGATTAAGAG GCTACTTAAT CGACTCCTTC
TGGTTGCAGT GGCTCATCTA TCTAGGTGGC TTTATTGAAG CATTTCTGTT GACGACCATC
ATGGTACTCA GATTAAGGGA TATGCAGCAC GCAAAATTAA AGATAGAGCT AACACACAGA
CAACACTTAG AAAACTACGC TAACGAACTC TCTCAGCAGG TTAAGCTGCA AACAAAGCAG
CTACTCGAAG CAAAAGAGAA AGCGGAAACC GAGGCTAGAG TTGATATCTT AACCGGGCTA
ACTAACCGCC GAGCTTTTAT CGAATCAGCC CATGGCTTTT TAGCAAGGGC CAACCGCCAG
CCAGAAACTC ACCTTTACCT GTTGATGATA GATATTGACC ATTTCAAGAA GATAAACGAC
ACCTACGGCC ACTCGGCAGG TGATGCGGCG CTTGTTGCGG TCGCCAACTC CCTATCAGAA
ACCATACGCA CGATCGATGT TGTCTCTAGA TTAGGGGGAG AGGAGTTTGC AGCCTTAATG
GAAAATAAAG ATCCTCAAGG TGCAATCAAC CTCTCTGAAA GGTTACGTAA AGCGATCGAG
GAGCTTGTGA TTGAGCATGA GGGACAACAG ATAAAGCTAA CCACCTCTAT TGGAATCGCA
AAATGGGGGC CCATGGACAA CTTAGATACC TTAATGAATC AGGCTGATCG TGCTCTGTAT
CAAGCAAAAG AGTCTGGCCG AAATTGTGTC AACTCTAGCT GTTTTGAGCA TCATCAGCTT
AGACTTGTCT AA
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| Protein sequence | MRLISINSRQ ISKRVLLTGI MFFLYGLLYT STLHAASPDA IDISTHHQGQ TTGDNYYYLV
DKSNALSLSD VIANSSWTKS EPNITNRGFT SASSWMKFTL KNSSQTNFNI ILEYVEASVG
SIDVYHRRLG SDEEFTHANF TFSAPVEARE VSFYRPAFEL SLPYLESHEV YVRIFPGDEF
PMHSFTAMRI WDQASFYLAT HIELTFLVIL LCTELFMGFA TLLVFFISRD KMFLYYSIFA
FSIASLFASL SGVWGYFFAR ESYQLWMVVL QISLSQIAAI WFVRCFLNIR QISKMIDNAL
LVAIAVSIAG VIINLSGYPY YPRLIIDNIA FLYILLVPIG LFAWKKDVPH AGLFTFSWAV
FILGMLTASL RLRGYLIDSF WLQWLIYLGG FIEAFLLTTI MVLRLRDMQH AKLKIELTHR
QHLENYANEL SQQVKLQTKQ LLEAKEKAET EARVDILTGL TNRRAFIESA HGFLARANRQ
PETHLYLLMI DIDHFKKIND TYGHSAGDAA LVAVANSLSE TIRTIDVVSR LGGEEFAALM
ENKDPQGAIN LSERLRKAIE ELVIEHEGQQ IKLTTSIGIA KWGPMDNLDT LMNQADRALY
QAKESGRNCV NSSCFEHHQL RLV
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