| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_2724 |
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| Symbol | |
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| ID | 6117023 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | - |
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| Start bp | 3334619 |
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| End bp | 3338041 |
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| Gene Length | 3423 bp |
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| Protein Length | 1140 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 641634255 |
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| Product | integral membrane sensor hybrid histidine kinase |
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| Protein accession | YP_001761095 |
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| Protein GI | 170727069 |
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| COG category | [E] Amino acid transport and metabolism
[R] General function prediction only
[T] Signal transduction mechanisms |
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| COG ID | [COG0591] Na+/proline symporter
[COG0642] Signal transduction histidine kinase |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.178694 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 5 |
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| Fosmid unclonability p-value | 0.00103188 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAACTTAA CCATTTTCGT AGGCGTGATT GCCGTCCTTT ATGTCTTTTT GCTGTTTCTC
TTAGCTTGGG GGGCTGAACG CTGGTTCAGT CAATTTACTA AGCGAATTCA AGTGTGGGTG
TACGGCCTCA GTTTGGCTGT TTACTGCTCA TCATGGAGCT TTTTAGGGAC AGTGGGGCAA
TCGGCTCAAG ATCTTTGGTC ATTCCTGCCT ATTTTTGTCG GACCTATTCT TATTTTTACC
TTTGGTTTTG GGTTACTACG TAAGATGGTG CTGGTCTCTA AGGCCCATAA CATCACCTCC
GTTGCGGATT TTATCGCTGC GCGATATGGC AAGTCACAGC TTCTTGCTGC TATCGTCACT
CTTATTGCAC TGTTTGGTAT CATGCCCTAT ATCGCTTTGC AGCTTAAAGC GATGGTATTT
AGTCTTAATT TATTCCAGCC TGAAGACTCA CCTTTCGATG GAGCTAAGGT CTCGCTTATT
ATCACAGCCA TTTTGGCTAT GTTTGCCATC TTGTTTGGTA CTCGCAAGCT TGATGCTACG
GAGCATAACC CAGGGATGAT GCTGGCGATC GCGTTTGAGT CCCTTGTTAA ACTCGCAGCC
TTTTTGATTG TAGGCATAGT AATAAGTTTT GGTTATTTCG ATGGTTTTGG TGATATCTGG
CAACAAGCTG AGCAAAAAAA TCTTATCAGC GCCCCTGAGT TAAGTATTAG CGCCTTGATG
CCACAACTTT TAGTTGGGAT GGCGGCGTTT TTATGTATGC CACGACAGTT TCACGTCATG
ATGGTGGAGT GTAGTAACGA AAAGACCTTG CTTAAAGCGC GTTGGTTATT TCCTCTTTAT
CTGCTGCTTT TTGGATTGTT TGTCGCCCCT TTAGCTTTGG CTGGTAAGCT GATTTTAGGC
GATAGCGTTG CAGCCGATAC CTATGTCATC AATATGCCTT TGGCACTCGA TCAGCCTATA
GTTGCGGTGA TCGCTCTGCT TGGGACCTTG TCTGCTGCGA CGGGGATGGT GATTGTGGCG
GTGGTAACCA TTAGTGTCAT GGTCAGTAAT GAGTGGTTGG TTCCTATGAT GCTGAGAACT
GGCAAAATCA GGCAGAAAAA TTTCAGTCAA TTCTCTCAGT TTCTACTTAA TGCACGACGA
CTCTCTATCA TTATCATTTT AGGATTAGGT TACTTTAGTT ACCTGTCATT TATCGACAGC
GACTCTCTGT CGGGTCTTGG TATGCTCTCC TTTGGCGCCT TTGCCCAGTT AGCACCAGCT
CTGATTGGTG GTATGTATTG GAAGCATGGT AATCGTTCGG GGGTCTTAAT GGGCCTTATC
GTTGGTTTTG GGCTTTGGTG TTATATCTTG CTAAAAGGTG CCAGCGATGT ATCAGGTGTC
TTTAATAATG ATTTTGGCTT ATTGGACTCG ATCAACCCTA ATGTTCGCGA TATTTTAACG
GCACTGCTGG CAAACTGTGC CTGCTATATG TTGGGCTCAA TCTGGTTTAG AGCCGGTGTT
GTTGAGCGGA TACAGGCCAG TGAGTTTGTT TCACCCGGAA ATTTGAAAAG CAATAGTACG
CGTAAAGCTG CTGCCGTTTC TCAGCAAGAT CTATTGATCT TAGCCAGCCG ATTTGTCAGT
CCAACGCGTG CCTATGAGAG TTTTTCTCGC TTTTCTGAGG AGGCGGTAAA GAGTGATAGT
TGGCATAAAT CCGCGCCTCC AGAGTTGATT GCCCATACCG AGCATATGTT AGCGGGTGTC
CTCGGTGGCT CTAGTGCTTC ATTGGTCATG GATTCAGTGC AGCAAGGACG AGATCTCGCC
CTCGATGAGG TGTTTAGTTT AGTCGATGAA GCGTCATCCA AAATTATTTT AAGTCAAGAT
ATGCTCAGAG GGGCGATTGA ACACGCTTAT GAGGGGATGA GTGTGGTCGA TAAAGACCTT
AATCTGGTGG CTTGGAACTA TAAATATGCT GAATTGTATC AATATCCAGC TTCGTTTTTA
CAGGAGGGGA TGCCGATAAG CGATGTGGTG CGCTTTAATG CCAGCAGAGG CTTTTGTGGT
GAAGGCGACA TTGAAGAGAA GGTCAATACA CGGGTTCAGC ACATGCGTGA TGGGACTGCC
CATGTCTCTG AGCGCAGACG CAAAGATGGC AAGGTGATCA AAATTCAGGG TAACCCTATG
CCTGGTGGTG GCTTTGTGAT GACCTTTACC GACATTACTC AGTATCGGGA GCATGCTAAA
GCGCTCCAAG AGATGAATGA CACGTTAGAG GCTAGAGTAA AGGAGCGGAC TTACGAGTTG
GCGATGCTAA ACAGTCAACT ACTTGAGGCT AAAGCTCAAG AGGAGATGGC AAACGCGTCT
AAGAGTAAGT TTCTTGCCGC TGTGGGTCAT GATTTGATGC AACCGTTAAA TGCGGCGCGG
CTGTTTACCG CTTCCTTGTC TCAATACCCT AACTTAGATC AAGAGGGCAG AACGACCCTG
TCTCATGTCA ATAGCTCACT TAAAATAGCG GGGGAGCTGC TTACCGATCT GCTTGATATC
TCCAAACTAG ACTCTGGAAT GATTGAGGTT AACCGTCGTG ATTTTTCCGT CTCTGAGTTG
ATCGATGGAC TGGGAGTCGA GTTTGCAGCC ATGGCTAATG ATAATCAGAT TAAATTCAAA
ATGGTCTCCT CTAGTACCAG TATCAATTCA GATCTCAATC TATTGAGGCG GGTGTTACAG
AACTTTCTCA CCAATGCTTA TCGATATGCC AGAGGGAGTA AGGTGCTATT TGGTTGTAGG
CATAGAGGAG ATGAGCTCGA GATCCAAGTG CTTGATACCG GTTGCGGTAT AGATGAAGCC
GAGACTAAAG AGATCTTTAA AGAGTTTAAA CGACTCGATA ATCCTACCAG CAACAGCGTG
AGTGGTTTAG GGTTAGGCCT AGCGATTGCC GACAGAATAA GCCGAGTCTT AAATCATAAA
ATAGATGTTT CATCTGTGTT AGGTCGGGGC TCAGTATTCT CGATTCGGGT GCCACTAGGT
AAAGCTATCA GTGAGCCGCA ACCTAAGAAG ATCCCAAGCC TGTTGCAACC TTTAGCTGGC
GTTAAAGTAC TCTGTATCGA TAATGAAGAA GCTATTTTAG CCGGATTGGA AAGCTTGCTT
AGTCGCTGGA AGTGTGAGGT TATTAGCGCT AAAGATCTGG CTGATGCGCG TATTAAACTT
GGCCTTAAAG GTGTTGCTCC TGATATTGTC TTGGCGGATT ACCACCTAGA CGACGGGCAA
AATGGCGTCG ATGCCCTCAA CGGTATACGT GCTCTGTATG GAAGTCATCT CCCTGGCATA
TTGATCACAG CTAACACCAG TAAACGTTTG ATTGATGATG TGCATAGTCA AGGGTATCAC
TACATGGCCA AGATGGTTAA ACCTGCAGCA TTGAGGGCGT TGATTTCGAG TTTAGTTAAG
TAG
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| Protein sequence | MNLTIFVGVI AVLYVFLLFL LAWGAERWFS QFTKRIQVWV YGLSLAVYCS SWSFLGTVGQ
SAQDLWSFLP IFVGPILIFT FGFGLLRKMV LVSKAHNITS VADFIAARYG KSQLLAAIVT
LIALFGIMPY IALQLKAMVF SLNLFQPEDS PFDGAKVSLI ITAILAMFAI LFGTRKLDAT
EHNPGMMLAI AFESLVKLAA FLIVGIVISF GYFDGFGDIW QQAEQKNLIS APELSISALM
PQLLVGMAAF LCMPRQFHVM MVECSNEKTL LKARWLFPLY LLLFGLFVAP LALAGKLILG
DSVAADTYVI NMPLALDQPI VAVIALLGTL SAATGMVIVA VVTISVMVSN EWLVPMMLRT
GKIRQKNFSQ FSQFLLNARR LSIIIILGLG YFSYLSFIDS DSLSGLGMLS FGAFAQLAPA
LIGGMYWKHG NRSGVLMGLI VGFGLWCYIL LKGASDVSGV FNNDFGLLDS INPNVRDILT
ALLANCACYM LGSIWFRAGV VERIQASEFV SPGNLKSNST RKAAAVSQQD LLILASRFVS
PTRAYESFSR FSEEAVKSDS WHKSAPPELI AHTEHMLAGV LGGSSASLVM DSVQQGRDLA
LDEVFSLVDE ASSKIILSQD MLRGAIEHAY EGMSVVDKDL NLVAWNYKYA ELYQYPASFL
QEGMPISDVV RFNASRGFCG EGDIEEKVNT RVQHMRDGTA HVSERRRKDG KVIKIQGNPM
PGGGFVMTFT DITQYREHAK ALQEMNDTLE ARVKERTYEL AMLNSQLLEA KAQEEMANAS
KSKFLAAVGH DLMQPLNAAR LFTASLSQYP NLDQEGRTTL SHVNSSLKIA GELLTDLLDI
SKLDSGMIEV NRRDFSVSEL IDGLGVEFAA MANDNQIKFK MVSSSTSINS DLNLLRRVLQ
NFLTNAYRYA RGSKVLFGCR HRGDELEIQV LDTGCGIDEA ETKEIFKEFK RLDNPTSNSV
SGLGLGLAIA DRISRVLNHK IDVSSVLGRG SVFSIRVPLG KAISEPQPKK IPSLLQPLAG
VKVLCIDNEE AILAGLESLL SRWKCEVISA KDLADARIKL GLKGVAPDIV LADYHLDDGQ
NGVDALNGIR ALYGSHLPGI LITANTSKRL IDDVHSQGYH YMAKMVKPAA LRALISSLVK
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