| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_2597 |
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| Symbol | def |
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| ID | 6116894 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | - |
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| Start bp | 3175160 |
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| End bp | 3175651 |
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| Gene Length | 492 bp |
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| Protein Length | 163 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 641634127 |
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| Product | peptide deformylase |
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| Protein accession | YP_001760969 |
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| Protein GI | 170726943 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0242] N-formylmethionyl-tRNA deformylase |
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| TIGRFAM ID | [TIGR00079] peptide deformylase |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.442514 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGGCTGTAC TCGATATTCT CACCATCCCT GATGAACGAT TAAAAAGAAA AGCTAAACCG
GTAACTGATA TCAGCGCGGT GCAGGGTTTT ATTGATGATC TATTAGAAAC CATGTACCAC
ACCGATGATG GAATTGGTTT AGCTGCAACA CAAGTTGGCA GTGAACATGC GATATTGGTT
ATCGATCTGT CACCTGAAAG AGATCAACCT CAAGTCTTGA TCAATCCTGA GATAGTCGCT
GCAGAAGGCG AGTTTGTCGG TGAAGAGGGA TGTTTATCGA TCCCAGGTTA CCGAGCTAAA
GTGGCCAGAA ATGAGAAGGT GAAAGTGACA GCCCTTGATA GAGAGGGAAC ACCTTTTGAA
ATTGAAACTG ATACCTTTTT AGCGATAGTG CTTCAACATG AGATGGATCA TCTCAATGGC
GTCGTGTTTA CCGATCACCT TTCTAAGTTA AAGCAACAAA TAGCACTCAG AAAAGTGAGC
AAATACGCTT AA
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| Protein sequence | MAVLDILTIP DERLKRKAKP VTDISAVQGF IDDLLETMYH TDDGIGLAAT QVGSEHAILV
IDLSPERDQP QVLINPEIVA AEGEFVGEEG CLSIPGYRAK VARNEKVKVT ALDREGTPFE
IETDTFLAIV LQHEMDHLNG VVFTDHLSKL KQQIALRKVS KYA
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