| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_2555 |
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| Symbol | |
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| ID | 6116852 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | + |
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| Start bp | 3126285 |
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| End bp | 3128189 |
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| Gene Length | 1905 bp |
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| Protein Length | 634 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 641634085 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_001760927 |
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| Protein GI | 170726901 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2200] FOG: EAL domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.151279 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.188336 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCGTTT CAAAACTTTT TCATAGTTTT CTTTTTTTAC TTTTTACAGG GCTGACTCTC
CTTGTTTACG TCGAGCTAAC CCAGCAATTA ACAGAAAAAG CGGATCAACG GCTATCTGAT
TTTCAATCTT ATATGAATTT ACCCCGCACT TGGCCAAGTG ACGGTCCGCA ACTCTACTCA
CAGATAGAGT CCCAGGCCAA ACTGCAATTT TTTCAATTCA TTCATTCTAC AGACAGCAGT
GCAAACTTAA CCAAAGGTGA GCTCAACTTC GTATCAGATC ACCCTTTATC TCCCTTATTT
CAACAAGAGC TACCTGATAC TCGGACACTA GAAGATGGTA GGCTGCAGCT AAAACTCGCA
ACCGATGATT TAACCCTCAA TGCACTCACC CAATTCCAAC AATTTTGTGC ATTCATCTGG
GCTATCTATC TGACCATAAC CGTCGTCTTT GTTCTATTGA TGATGAAAAA TAAACGTACC
ATCATTTATG CAAGCAGTTA CGTCAATGAT CTATCCAGTC ATAAGTACAA TGCATTAGAA
AGCTCTAAAC TAAAGGCTGA GTTTAAGCCA TTAGCCAGTG CATTAGAGCA TTGTCGTAGT
GAATTGAAAA AAAGAGATGA AGAGTTTGCA AAAGAACATG AGCGACTTAA TAAAGCCGCT
TTTGAAGATC AGATAACAGG GTTTGCAACC CGTACACGCT TTACACAGAA GTTAGAGTCT
TTATCTGCGG AAGGAAAAAG CCAAATTGGT TTAATGGCGT TAATTAAAGC TTCTGAGTTA
GGTATCATTA ATGACAGTTT AGGCAGATCC GCTGGAGATG AATATCTAGC AAAAATTGCC
AACTGTATTC GCCACTCGAT GACAAAATAC CCAAATTCAG ATTGCTACAG AATTTCAACT
GCAGACTTTG CTGTCTTCAT TCCAGGCCTA GTCATTAAAG ATGGACTCCC CTTTGTCGAA
AACTTGAAAG CACAGTTTGA CGAATACCAG CAAACAATCA ACAACGAATC GATAGCCCAT
ACTGGATTGG TTCCCTATGA ACATGATAGT GAACCAGGCA AGCTTCTGTC ACAAGGTGAT
ACCGCTGTCA GTATCGCTCA AACTTTGGGG CCTAATTGTT TTTACCTTCA CGAAAAAGGT
AAAAATGATG ATCTCTATGG AGACACAAAA TGGAAAGAGT CTATCGGGGA CCTTATTAAT
AGACGGGCGA TAAAATTTTA CCAGCAGGCG ATATTACCCT GCCGAAAAGA TGCCAAGATC
TACAATGAGC TATTTTCCAG ATTCTATAAC AGTGAGGGGA AATTTTTACC CACTGCAACC
GTGATAGCCA TGGCGGAACG TCATGATATG GTCGTCGATC TCGACAAACT TATTGTTATC
ACAACACTAA AGATGTTAAT TGAAAACCCT GCATTAACAG GCTCCTACGG CATAAATATT
AGCTCCTCAT CAATAATGCA GGAAACCTTT ATTGCCTGGC TTAAAGCGCT GTTAGTCAAG
CAACGGCATA TTGCTGCCAG ACTTGTTTTT GAGGTCAATG AATCAGGTAT GCAAACTAAT
CTGGTGGCCA GCTACAAGTT CGTGCAAACC ATTCATAGCG TTGGCGCAAA AGTGTCTGTT
GAACATTTCG GCATGGGCTT TACCTCATTC AAGTTCTTTA AACAGGTCCG ACCCGACTTT
ATTAAACTCG ACGGCACTTA TTCAAACAAC ATAGATACAG ACACCAATAA TCAATTTTTT
GTTAAGATGA TTATCAATAT CGCACGTAGA TTAAACATCC AAGTGATCTC CACTAGTGTC
GAACGTCAGG AGGAGAAGTT TGTACTGGAA AAGTTACTGG TTGATGGGCT ACAAGGTTAC
TATGTAGCCG AGCCTCAAGC CCTTCAAAAC AAAGCAATAT CCTAA
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| Protein sequence | MSVSKLFHSF LFLLFTGLTL LVYVELTQQL TEKADQRLSD FQSYMNLPRT WPSDGPQLYS
QIESQAKLQF FQFIHSTDSS ANLTKGELNF VSDHPLSPLF QQELPDTRTL EDGRLQLKLA
TDDLTLNALT QFQQFCAFIW AIYLTITVVF VLLMMKNKRT IIYASSYVND LSSHKYNALE
SSKLKAEFKP LASALEHCRS ELKKRDEEFA KEHERLNKAA FEDQITGFAT RTRFTQKLES
LSAEGKSQIG LMALIKASEL GIINDSLGRS AGDEYLAKIA NCIRHSMTKY PNSDCYRIST
ADFAVFIPGL VIKDGLPFVE NLKAQFDEYQ QTINNESIAH TGLVPYEHDS EPGKLLSQGD
TAVSIAQTLG PNCFYLHEKG KNDDLYGDTK WKESIGDLIN RRAIKFYQQA ILPCRKDAKI
YNELFSRFYN SEGKFLPTAT VIAMAERHDM VVDLDKLIVI TTLKMLIENP ALTGSYGINI
SSSSIMQETF IAWLKALLVK QRHIAARLVF EVNESGMQTN LVASYKFVQT IHSVGAKVSV
EHFGMGFTSF KFFKQVRPDF IKLDGTYSNN IDTDTNNQFF VKMIINIARR LNIQVISTSV
ERQEEKFVLE KLLVDGLQGY YVAEPQALQN KAIS
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