Gene Swoo_2542 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSwoo_2542 
Symbol 
ID6116826 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella woodyi ATCC 51908 
KingdomBacteria 
Replicon accessionNC_010506 
Strand
Start bp3108535 
End bp3110811 
Gene Length2277 bp 
Protein Length758 aa 
Translation table11 
GC content46% 
IMG OID641634059 
Productacyl-CoA dehydrogenase 
Protein accessionYP_001760914 
Protein GI170726888 
COG category[I] Lipid transport and metabolism 
COG ID[COG1960] Acyl-CoA dehydrogenases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones12 
Fosmid unclonability p-value0.204346 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACTCTAT TTATACTTGC ACTACTGGTT GTTATTGTGC TGTTTGGTGT CAAAAGTATT 
AGGATGCAAT TTATTACGCG TCCAATTTTT TCGTTTTTTA AAAAGGTACT TCCTCCGCTT
TCAGATACTG AAAAAGAAGC GATGGAAGCG GGTGATGTGT GGTGGGAAGG TGAGTTGTTT
AGAGGTAAAC CCAATTGGGA TACTCTGCAT AGCTACGGTA AACCTAAACT AACTGCTGAG
GAGCAGGATT TTATTGAAAA TCAAGTGATG ACAGCTCTCA CTTTAATTGA TGATTTTGAT
ATTGTACAAA ACCGCAAAGA TTTGCCACCA GAGCTATGGG ATTACTTTAA AAAAGAGGGG
TTCTTTGCCC TTATAATACC AAAAGAGTAT GGCGGTAAGG CCTTCTCTGC ATACGCTAGC
TCGACGATAG TTGCCAAGCT CGCTAGCCGA AGTGTTAGTG CGGCTGTGAC TGTTATGGTT
CCCAACTCTC TAGGACCAGG TGAATTACTG ACACATTATG GTACCAAAGA GCAACGTGAA
TATTGGTTAC CAAAACTGGC ATCTGGTGAA GCAGTGCCTT GTTTCGCTCT GACAGGTCCT
GAAGCGGGCA GTGATGCAGG CGCAATTCCC GATACCGGTG TTGTCTGTAG AGAGACATTT
GAAGGTGAAG AGGTATTGGG ATTAAGGTTG AACTGGGATA AGCGTTATAT CACGTTAGCC
CCAGTTTCAA CGGTATTGGG TCTGGCATTT CAGATGGAAG ATCCAGATGG ACTGTTAGGG
GATAAGAAGG AGCTCGGAAT TACCTGTGCG CTTATCCCAA CAGATCATGA AGGAGTGGTC
ATTGGACAGA GACACAATCC ATTAAACATG GCCTTTATGA ATGGTACAAC TCAAGGTAAG
GATGTGTTTA TTCCTCTTGA TTGGATCATT GGTGGGCCTC AGTATGCAGG ACGTGGCTGG
CGTATGCTAG TTGAGTGTCT CTCGGCGGGG CGTGGTATCT CACTGCCTGC ACTTTCAACC
GCATCGGGTC ACACTGCGAC TAAGACAACA ACGGCATACA GTTATGTCCG TCACCAATTT
GGCCTATCTA TCGGTCATTT TGAAGGTGTT CAGGAGGCCC TTGCTCGGAT CATCGCCAAT
ACCTATCAGT TGGAGGCTGC AAGACGCCTA ACAACTACGG GGATCGATCT TAAGGTTAAA
CCCTCTGTAG TGACTGCTAT TGCCAAATAC CACATGACTG AGATGAGTCG TGATGTGCTT
AATGATGCAA TGGATATTCA GTCGGGTAAG GGGATCCAAC TCGGCCCTAA GAACTATTTA
GGTCAGCCCT ATATGGCGAA CCCCATCTCT ATTACTGTCG AGGGAGCTAA CATTCTAACT
CGCAGCTTGA TGATCTTTGG TCAAGGTGCA ACACGTTGTC ACCCTTATGT GCTCGCTGAG
ATGGAAACGG CTGCGATGGA GGATACTTGT GCAGCTTTGG AACGTTTTGA CTCCTTGCTG
CTTGGTCACC TTGGTTATGG AGCAAGAAAT GCGTTTAGCT CACTCTTTAG CGCTTTAACT
GGAAGTCGCT TTAACCAGTC TCCTGTTAGT GGTGAAACTC AGCAGTACTA CCGCGATATG
ACTCGACTAT CATCGGCTTT GGCTTTGATG ACCGATCTCT CGATGTTGAT CATGGGAGGC
GATCTTAAGC GAAAAGAGAT GCTTTCAGCG CGTATGGGTG ACGTATTGAG TGAGCTATAT
CTAGCATCGG CTACATTAAA GATGTTCGAA GATAATGGTC GTCAACATGA TGATCTGCCC
GCGGTACGTT ATGTGATGAT GACTCGTTTG CAAAATGCAG CTAATGCACT TCAAGGGGCG
CTACGTAACT TCCCTAATCG TCCTGTTGCC TGGATGATGA GAGCATTGAT CTTCCCGTTA
GGTAACCATT TCAATGGACC GAGTGACAAG ATGACCACTG AGCTTGTTAA GGGGATGATG
CAACCTGGGC CTGCTCGTGA CCGTTTAACC TTCCTCTGTC CTGATTTTGA ACAGGATAAA
GGTGGTATTG CGGAAGTTGA AGCGGCATTT TTGGCGCAAT ATGAGTGCCG TAACATCTAT
AAAAAGATAA AAGTGGCTCA GCGTGATGGC ACATTGCCGA AGAAGTTAGC TGGCCTTGAG
TTATTTGCCT TAGCAGCAGA GCAGTCCATT ATCACTCAAG ATGAGCTCAA CTCATTGCTT
AAAGCCGATG AACTGCGTCT TGCGGCAATT AATGTTGATG ATTTTAAAAG CTTGTAG
 
Protein sequence
MTLFILALLV VIVLFGVKSI RMQFITRPIF SFFKKVLPPL SDTEKEAMEA GDVWWEGELF 
RGKPNWDTLH SYGKPKLTAE EQDFIENQVM TALTLIDDFD IVQNRKDLPP ELWDYFKKEG
FFALIIPKEY GGKAFSAYAS STIVAKLASR SVSAAVTVMV PNSLGPGELL THYGTKEQRE
YWLPKLASGE AVPCFALTGP EAGSDAGAIP DTGVVCRETF EGEEVLGLRL NWDKRYITLA
PVSTVLGLAF QMEDPDGLLG DKKELGITCA LIPTDHEGVV IGQRHNPLNM AFMNGTTQGK
DVFIPLDWII GGPQYAGRGW RMLVECLSAG RGISLPALST ASGHTATKTT TAYSYVRHQF
GLSIGHFEGV QEALARIIAN TYQLEAARRL TTTGIDLKVK PSVVTAIAKY HMTEMSRDVL
NDAMDIQSGK GIQLGPKNYL GQPYMANPIS ITVEGANILT RSLMIFGQGA TRCHPYVLAE
METAAMEDTC AALERFDSLL LGHLGYGARN AFSSLFSALT GSRFNQSPVS GETQQYYRDM
TRLSSALALM TDLSMLIMGG DLKRKEMLSA RMGDVLSELY LASATLKMFE DNGRQHDDLP
AVRYVMMTRL QNAANALQGA LRNFPNRPVA WMMRALIFPL GNHFNGPSDK MTTELVKGMM
QPGPARDRLT FLCPDFEQDK GGIAEVEAAF LAQYECRNIY KKIKVAQRDG TLPKKLAGLE
LFALAAEQSI ITQDELNSLL KADELRLAAI NVDDFKSL