| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_2526 |
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| Symbol | |
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| ID | 6116810 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | - |
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| Start bp | 3087286 |
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| End bp | 3089052 |
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| Gene Length | 1767 bp |
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| Protein Length | 588 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 641634043 |
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| Product | type VI secretion protein |
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| Protein accession | YP_001760898 |
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| Protein GI | 170726872 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3519] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR03359] type VI secretion protein, VC_A0110 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGTCTCAAG ACAAATATTT CAGGGATGAA TTGTCTTTCC TCAGAGAGCA GGGGAAGCAG
TTCTCAGATC TTCATCCACA ATTGGCTCGC TACCTACATG GCAACAATAC CGATCCAGAT
GTGGAGCGTT TGTTAGAGGG GTTTGCTTTT CTAACCGGTA GATTACGTGA AAAAATTGAC
GATGAGTTCC CTGAGTTAAC TCACTCAATG ATCAATATGT TGTGGCCTAA CTATCTTAGG
CCAGTACCTA GTACCAGTAT TGTGCGCTTC TCTCCTATAG AACGTGGTAT TAGTCATAAG
CAGACAATTG AGAAGGGCTG CATGTTAGAT GCAACCCCTG TCGATGGTGA AGTGTGTCAT
TTCACAACCT GCAGAGAGGT TAATGTCTAT CCCTTAGTGG TGGATCACAT CGGCTCATTT
CACTCTAGAG AAGCCTCTAT TGTTGATATT CACCTGAACA ACTTAAGCGA TCTTTCACTC
AATGATATTG GGCTTGATGA TCTAAGGTTT TACTTAGGTG GACAAGATTA CAGTGCGCAG
ATGCTTTACC TCTGGCTCAA TCACTATCTT GAAGGGATTG AGATCCATGT CGGTGAGCGG
CATTACTCGC TGCCTAAATC CAGTTTTAAA TGTGTGGGGT TTGCCAGTGG TGATGGCATT
TTACCTTACC CTCAAAATGT CTATGAAGGG TATCGTATTT TACAGGAGTA TCTCTCATTT
TCTGATGCAT TTATGTTCTT TGATATCTGT AATATTTATA AATGCTTACC CAGTGATTTA
ACCGGTAACT TCTCCATTAA GTTAATGTTT TCTCGCACAT TACCAGCAGA TGTATTGATT
AAGGATGAGT CTTTTCAGCT CTATTGTGTT CCTGTACTCA ACCTTTTTTC ACATGATGCA
GATCCGATCG ATCTTACTGG TAAAAAAATA GAGTATCCCA TTGCACCATC GAGTCGAAAA
CCATCACATT TTGAGATATT TAGTGTCGAT AAAGTGCAAG GTTGGGTCGA TTCAGACGCT
GGACGTTTTC GTGGTGAAGA GCGTGTCTAT ACCCCCTTTG AAAGCTTCCA GCATGAGATT
GAGCGGGCTC GTGAGCGTGT GGCACTTTAT TACCGTTTAA GAGTAAAAGA GAGTATTCGT
GAAGATGGCT TCGACCACTT TATCTCTTTT GTCAGAGGCG ATGAGACTCA AAGCTTTGAT
GTCAGTGAAG CGGTGTCGAT TAGTTTAACT TGCACGAATC GTCAGCTACC GACCAAATTA
GGCAAAGGTG ATATCTGCGT TGCTACCGAC AGCTCACCTA ATTTTGCCAC CTTTAAGAAT
ATTACAGAAC CAAATGCATC CCTTCGTCCT GTTCTCGATG GCAGCATGCT ATGGACCTTA
ATCTCTAATT TGTCATTGAA CTACCTTTCA TTGCTATCTA AAGATGCCTT GTGCTCGATT
ATTCGAGCCT ATGATTTTAA ATCTTTGATT GACAGACAAG CTGAGCGGAT CACGCAGAAA
AGGCTTGATG GGATAGTGAG TATTGAGTCA AAGCCGACAG AGCGAATATT ACGTGGTATG
CCAGTGCGCG GCTTGATGTC CGAAATCGTG CTTGATCAAA AGTACTTTGG TTCTGAAGGC
GATCTATATC TATTTGCCAC TGTACTTAGC CGATTTTTTG CACTCTACGC CAGCATCAAC
TCATTTCACC AGTTAGTAGT GATTAATGCA GCTAATCAAG AAAGGTACAC ATGGGATATT
CAGATAGGTC AACAGCCACT GATTTAA
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| Protein sequence | MSQDKYFRDE LSFLREQGKQ FSDLHPQLAR YLHGNNTDPD VERLLEGFAF LTGRLREKID
DEFPELTHSM INMLWPNYLR PVPSTSIVRF SPIERGISHK QTIEKGCMLD ATPVDGEVCH
FTTCREVNVY PLVVDHIGSF HSREASIVDI HLNNLSDLSL NDIGLDDLRF YLGGQDYSAQ
MLYLWLNHYL EGIEIHVGER HYSLPKSSFK CVGFASGDGI LPYPQNVYEG YRILQEYLSF
SDAFMFFDIC NIYKCLPSDL TGNFSIKLMF SRTLPADVLI KDESFQLYCV PVLNLFSHDA
DPIDLTGKKI EYPIAPSSRK PSHFEIFSVD KVQGWVDSDA GRFRGEERVY TPFESFQHEI
ERARERVALY YRLRVKESIR EDGFDHFISF VRGDETQSFD VSEAVSISLT CTNRQLPTKL
GKGDICVATD SSPNFATFKN ITEPNASLRP VLDGSMLWTL ISNLSLNYLS LLSKDALCSI
IRAYDFKSLI DRQAERITQK RLDGIVSIES KPTERILRGM PVRGLMSEIV LDQKYFGSEG
DLYLFATVLS RFFALYASIN SFHQLVVINA ANQERYTWDI QIGQQPLI
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