Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swoo_2522 |
Symbol | |
ID | 6116806 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella woodyi ATCC 51908 |
Kingdom | Bacteria |
Replicon accession | NC_010506 |
Strand | - |
Start bp | 3083105 |
End bp | 3084439 |
Gene Length | 1335 bp |
Protein Length | 444 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 641634039 |
Product | type VI secretion protein |
Protein accession | YP_001760894 |
Protein GI | 170726868 |
COG category | [S] Function unknown |
COG ID | [COG3522] Uncharacterized protein conserved in bacteria |
TIGRFAM ID | [TIGR03353] type VI secretion protein, VC_A0114 family |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.711445 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 18 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCGTCAA GAAATAGAGT AATTTGGGCT GAAGGTTTAT TCATCAAGCC ACAACATTTT CAGCAGCAGC AACGTTATTT TGAGTATGTC ACCGATGAGC GTATGACCTC GGTCAACAGC TACCTCTACG GTATATCACA GCTCGAGCTA AACCCTGAGT ACCTCGGGTT TGGTCGTATT GCGATTCAAC GAGCTAAAGG CGTGATGCCA GATGGAACAG TATTTAATAT TCCCCAAGAG GACGTTCTGC CTAGTGCACT GGAAGTTGTT GATGGCTCAT TGGCCAACCA GATAGTGTAT CTGGCACTGT CACTACGCAG TGATTCGATA ACTGAAGTGA CGGAGAGTAC CTCATCGGGT AATACCCGCT TTGTGACTCA TCGCCATGAG GTGCGAGACA TTCATAGTGA GCAGGGGGAT TTTTCTACCA TAGATGTCAG CCCTGTACAG ATGAAGCTGA TGTTTGAAAA AGAGGATCGC AGTGCCTACT CCTCAGTGGC GATAGCTAAA ATCTTAGAAA AACGTCCAGA TGGTAGTGTG GTTCTGGATC CTAACTTTAT TCCTTGTCAT TACAATGTGC TGGGTGTGCC GTTTCTGCAT CGATTCATTG GTGAGATGGC AGGGATGATG AGAGAAAGAG CTAAAAATAT AGCGGTTAGA ATAGGCTCGC CAAGTCAAGG TGGCGTCGCT GATGTGTCAG ATTTTATGCT GTTACAAGCA TTAAATCGCA TGCAACCTGT ACTGCAACAC CTCTCACAAC TGAAAAGCCT GCATCCAGAG CAACTGTATC AGACATTGGT GAGCATTTGT GGAGAGCTAT TCTCCTTTAC CGATGACAGT CGAATTGCGC CAATATTTAA ACCTTACGAT CATGATATGC CGATCACCTC CTTTGGCCAA TTGATGAATA TGCTACGTCA GTCATTAAGT ATCGTCCTTG AGCCTAAAGC CGTGTCCTTA CAGTTACAGA AACGTAAGTA CGGATTGATG GTTGCGCCAG TACAAGATCC TGATTTGATC AAAGAGGCTG ATTTCATCTT AGCTGTTCGC GCTAAGTTGC CTTTAGAGGA GCTGAAAAAG CTCTTTATTC AACAAACTAA GATCGCTTCC GTTGAGAAGA TCCGCGAGTT GATCTCGTTG CAACTTCCTG GTGTCGGTTT AACTCCGCTA CCCGTGGCGC CAAGACAGTT GCCATATCAC GCAGGTTACA CCTATTTCCA ACTTGATAGG ACAAGCCCAT CTTGGGAGAT GTTACAACAC TCAACTGGAT TTGCCTTCCA TGTTGCTGGT GAGTTTCCTG AGCTCGAGTT GCAGTTCTGG GCGATAAGGA GCTAG
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Protein sequence | MSSRNRVIWA EGLFIKPQHF QQQQRYFEYV TDERMTSVNS YLYGISQLEL NPEYLGFGRI AIQRAKGVMP DGTVFNIPQE DVLPSALEVV DGSLANQIVY LALSLRSDSI TEVTESTSSG NTRFVTHRHE VRDIHSEQGD FSTIDVSPVQ MKLMFEKEDR SAYSSVAIAK ILEKRPDGSV VLDPNFIPCH YNVLGVPFLH RFIGEMAGMM RERAKNIAVR IGSPSQGGVA DVSDFMLLQA LNRMQPVLQH LSQLKSLHPE QLYQTLVSIC GELFSFTDDS RIAPIFKPYD HDMPITSFGQ LMNMLRQSLS IVLEPKAVSL QLQKRKYGLM VAPVQDPDLI KEADFILAVR AKLPLEELKK LFIQQTKIAS VEKIRELISL QLPGVGLTPL PVAPRQLPYH AGYTYFQLDR TSPSWEMLQH STGFAFHVAG EFPELELQFW AIRS
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