| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_2521 |
|---|
| Symbol | |
|---|
| ID | 6116805 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella woodyi ATCC 51908 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010506 |
|---|
| Strand | - |
|---|
| Start bp | 3082317 |
|---|
| End bp | 3083102 |
|---|
| Gene Length | 786 bp |
|---|
| Protein Length | 261 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 641634038 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001760893 |
|---|
| Protein GI | 170726867 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3455] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | [TIGR03349] type IV / VI secretion system protein, DotU family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.49989 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAACCAC AAAAACAGCC TCTGACAGAG CAACAACTCG ATGATGTTTT GTTTGATGAA
GTGAGAAACA TAGACGCCGA CAAAGAGTAT TGGTTTCAAT TACGTGGCGA CAATATTAAT
CAACTTATTG ATGCTGCAAC CCCACTTATG GGGATGGTCT TTAGAGTGCG AAAGTTAGCT
GTGTTAGATG ATGTGCAAAA GCTCTATCAC AATACGGTTG ACGACATTAT GGCCATCGAA
GCTGAACTGA CTGAGTCAGG CTTTGGTCGG GCGATTATCT TAGCGTATCG CTACGTGCTC
TGCTCATTTA TCGATGAAGC GGTGATGAAT ACTCCTTGGG GAGCCGACAG TGTCTGGGCT
GAGCATTCAC TGCTGACCCG TTTTCATAAT GAAACCTGGG GCGGTGAGAA AGTGTTTAGC
ATTCTCCAGC GGCTAGAGAC TGAACCTGCA AGCTACCGCG AGCTGCTCGA GTTTATCTAT
CTTTGCCTCT GCTTAGGATT TGAAGGGCGC TATAAGGTGG TGGTTAACGG CCGTGAAGAG
TTCGACAAAA TCGTGAATCG TCTCTATGAA ACCTTAAGGC ACCTTAGGGA TGAAGAGCCG
GAGCTGCTAT CCAATGCAAC TGATCATGTG GTTAATACCA AGTTTCAAAT TGGCAGGCAG
ATGCCCATCT GGACCATATT TGCTGGTTTT TTTGTGATGC TAGCGGTGAT CTTTATCTTC
TACTCGGTGT CGCTAGCCAA TAAATCAGCA GGTGTGTTGG ACCAACTGTT TCAGATCTTA
AATTAA
|
|---|
| Protein sequence | MKPQKQPLTE QQLDDVLFDE VRNIDADKEY WFQLRGDNIN QLIDAATPLM GMVFRVRKLA
VLDDVQKLYH NTVDDIMAIE AELTESGFGR AIILAYRYVL CSFIDEAVMN TPWGADSVWA
EHSLLTRFHN ETWGGEKVFS ILQRLETEPA SYRELLEFIY LCLCLGFEGR YKVVVNGREE
FDKIVNRLYE TLRHLRDEEP ELLSNATDHV VNTKFQIGRQ MPIWTIFAGF FVMLAVIFIF
YSVSLANKSA GVLDQLFQIL N
|
|---|
| |