| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_2519 |
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| Symbol | |
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| ID | 6116803 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | - |
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| Start bp | 3078163 |
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| End bp | 3079716 |
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| Gene Length | 1554 bp |
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| Protein Length | 517 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 641634036 |
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| Product | putative sigma54 specific transcriptional regulator |
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| Protein accession | YP_001760891 |
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| Protein GI | 170726865 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG3829] Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.431147 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGAGCACGG CGCAATGGCT ACAGCAAACA TCGACCTTAC TTGAGTGTAA GTTGGTGGAT
GATTTGATTG AGCAGTTTCT GCAGACTTTA GAGGATGAGT TAGGTCTATT TGACTCTCTC
TTGCTAACCC CCTCTGTCGA TGGGCGCTAT CTGCAGCCGG TAAAACCGAC ATCAACAGGT
CTGCTGAAGG TGGATGGGCA AGTGAGCTGG AACGTCACCG ACTTTCAGCA CCCATTTGCT
CATGTACTGC AAACTGCAAA GCCCATGGTG CTGGACTATT ACAGTTTGGC CTATTGGCAT
GATAACCCTC AGTTTGCAGC TTTTATCTCT GGTATTGAAA AAGATCACAG TTTGTTTCTC
TATCCGTTAA AGCAAAACGG CCAACTGTTA GGCGTGCTCT GTTTTGCTCT CGACTCAAGT
CGTAGCCTGC TTCAACGGCA GGATTGGCAG CAATATAGTG AGGTCTTTAT ACGTCACTGG
CAGTGGTTAA CCTCAGTTGC CGATCAAACT GGCCAAGCCT GTCAATTGAC GGACTCGATC
GCGGAGATAC GTGATGAGAT GACACTGCAA ACCAACCTTA CTCGTTTGTC TAGTGAGCTG
GTGGGTGAGT CAAGTGAGAT GGACAAACTT CGTAAAGATA TCTTACGTGG TGCCGGTACT
GTGTTATCTG TGCTTGTACA GGGAGAGACG GGCACCGGCA AAGAGTTAGT GGCCAAAGCG
GTTCATGATT ACTCCTCTCG TCATAAGGCA CCATTTATCG CCATCAACTG TGCGGCTATT
CCTGAAAACC TGCTTGAATC TGAGCTCTTT GGTTATGAGA AAGGCGCCTT TTCTGGGGCG
AATAGCAAGA AAGTAGGCTT GATCGCCCAA GCTGCCAAGG GGACGCTTTT TCTCGATGAG
ATAGGGGATA TGCCACTGAG TTTGCAATCT AAGTTGCTGC GGGTGCTTGA GTCTGGTCAT
TTCCGCGCCG TCGGTGGGTC AACAGAACTT CACTCAGATT TTCGCTTAGT TGCCGCGACT
CATGTGAACT TAAAAGAGAG GGTGAATGCT GGAGAGTTTA GGCGTGATCT TTACTATCGC
TTAAATCAGT TTCCCGTCAC TGTGCCAGTG CTTAAGTCAA GGCTTAGCGA TCTGCCGCAA
CTTATCCGCC ACTTTATTGG ACGTTTTAAT CGTCATCATC AAGCACAGAT CACAGGTATT
CGTTATGAAG CTTTATCAAA GTTAACGACC TACCACTACC CAGGCAATGT ACGAGAGCTT
AGGAATGTTG TTGAGTATGC CTGCGCACTT ACGGCTCATC AGGGGGAGAT TGATGTTAGC
GATCTGCCCA CGTTTGAGGA GCCAAGCTGT GAGTCCTCAA GTGGTAGTGA GCTTGAAGGT
CATGAATATG CAGATATTGG AGATTTGAAA GAGGCAGTTG CACAGTTTGA ACGTAACGTT
ATCCGCACTC GAATCAATCG ATTTAAGGGG GACCGAACTA AAGCTGCAAT GAGTTTAGGT
CTACCTAAAA GAACGTTTTC TCATAAATGT TTAAAGCTGG AGATAAATGA ATAA
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| Protein sequence | MSTAQWLQQT STLLECKLVD DLIEQFLQTL EDELGLFDSL LLTPSVDGRY LQPVKPTSTG
LLKVDGQVSW NVTDFQHPFA HVLQTAKPMV LDYYSLAYWH DNPQFAAFIS GIEKDHSLFL
YPLKQNGQLL GVLCFALDSS RSLLQRQDWQ QYSEVFIRHW QWLTSVADQT GQACQLTDSI
AEIRDEMTLQ TNLTRLSSEL VGESSEMDKL RKDILRGAGT VLSVLVQGET GTGKELVAKA
VHDYSSRHKA PFIAINCAAI PENLLESELF GYEKGAFSGA NSKKVGLIAQ AAKGTLFLDE
IGDMPLSLQS KLLRVLESGH FRAVGGSTEL HSDFRLVAAT HVNLKERVNA GEFRRDLYYR
LNQFPVTVPV LKSRLSDLPQ LIRHFIGRFN RHHQAQITGI RYEALSKLTT YHYPGNVREL
RNVVEYACAL TAHQGEIDVS DLPTFEEPSC ESSSGSELEG HEYADIGDLK EAVAQFERNV
IRTRINRFKG DRTKAAMSLG LPKRTFSHKC LKLEINE
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