Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swoo_2516 |
Symbol | |
ID | 6116800 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella woodyi ATCC 51908 |
Kingdom | Bacteria |
Replicon accession | NC_010506 |
Strand | - |
Start bp | 3072533 |
End bp | 3076096 |
Gene Length | 3564 bp |
Protein Length | 1187 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 641634033 |
Product | type VI secretion protein IcmF |
Protein accession | YP_001760888 |
Protein GI | 170726862 |
COG category | [S] Function unknown |
COG ID | [COG3523] Uncharacterized protein conserved in bacteria |
TIGRFAM ID | [TIGR03348] type VI secretion protein IcmF |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 19 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTGGTCTA AGCTCAAATC TTTCTTTATT AAGCTATTAC CGGAACTCAA ATCGGCTTTG CCTATTTTGT TAGTTGCCAT TTTTGTTTTG ATCAATGTGG GGATCTGGTG GGCAGGCCCT TGGCTTGTGA TTGATGAAAG TAAGCCTCTG TCGAGTGTTA ACTCAAGACT GATCGCTACT GTTATCTTCT CCTTGTCCTG TTTTACCATT TGGGGTTGGT TCCAATGGCG AAAGCTAAAG CAATACAATG TCGATAATGA GAAGTCACAG CAGTTAAAAG ACGATCCCAT CATTGGCATG GTAGAGCGTC AGGAGGTTGA ACTTAATGAT GTGATGTTGG GGCTTAAGGA GAGCCTTAAC ACACGAAACT ATCTCTATGC GCTTCCTTGG TATCTAGTAC TAGGGGTAGA AAATGCGGGT AAAACCAGTT TGATTAACCG TTCTGGTCAA AAGTTTGTCT TCTCCTCTGT GATGAGGGCA TCGGGTAAGA AAACCGAGAA TCCTTACTCA TTTGATTGGT GGATCAGTGA TGATGCGGTA TTGATCGATC CCGATGGAGA GCTATTGACC CAAAGAACGG AAGAGGGAAG CAACAACGGT GAGATGAGCA AGCGGCTTTG GATGCATTTT GTCGAGTGGC TAGATAAAAC ACGTAGCCGT CGTCCATTAA ATGGGGTTGT TCTGGCACTA GATATGGCAA ATATGGTGAG TGCGCCGACA TCTGATCGTA AAGCTTATGC CCACCTAATG CGTGCGCGTT TACGTGAGTT GATGGAAACC CTATCGACTC GTCTTCCTGT CTATATCACC TTGACTAAGC TTGATCTTTT GTTGGGATTT GAACCATTTT TCCGTCACTA CAATCAGGCT GAGCGTGATG AGATCATGGG ATTCACCTTT TCACTAAACT CAGTCAATGA TCTTGATAGT TGGCTTGAAG AGTTCAATGA AGATTATACC GACTTTATCA GCCGTATTAA TGCCCATCTT CCACGCGCGC TACTTCAATG TCGTGATAAA GAGGAGCGGG CAGCCATCTA CAGTTTTGTT AGGCAAGTCG CTGGTGCTCA TCAAGTTCTT CAGGAGTTTT TTGCAGATGC ACTGGCAAGC GATCAGTTCT CGACCTCTGC ACTGGTGCGA GGCGTCTATT TTACCTCTGT GTATCAGCAA GGGGTGCCGA CTAATGCTTA TGTCGATAGT GCTTCTCGTC GCTATGGACT TAGAGAATCG ATAAATAGTG CACAAAAAAG CGATAATTCA ACGCCATATT TTATTCATAC TCTGTTTCAG AAGATCATCT ACCCTGAGGC AGGTTTAGCC TCTGATAATT TTAAAGTCGC AAAGCAGAAA AGGCGGCTTA TGTTGCTCTC CTTTGTTGCT TGCTCTATCG CTTCTGTACT GCTGGTGGGC ACTTGGCATC GCTACTACTT ACAAAACAGC CAGCAAGCCG ATGCTGTACT GGATAAGGTG ACTGAGTTTA ATGAGCTCAA CGATCAAACA AGCTTTGATC AACTCGGTAA GAGTATTATT CCGCCGTTAA ATACCATACG TACGGCTACG TTAGAGTTTG GTTTTTTCCG TGAAAAACCT AAGTTAATCT CTGACTTTGG GCTGTATCAG GGCCATACCA TAGGTCCAAA AGTTGAAGAG ACCTATTTAA AGCTGCTCTC TTACCGTTAT TTGCCTGCAC TGCTAAAGCA GGTGGCAACA GATATGTCTG ATGCACCGAC CAATAGCAAT GAGAAGCTGG CTATGCTCAG AGTGTTTCGA ATGATGGTGG ACAAAAGCGG ACGTCATGAT GATTTTGTGA AAGCCTATTT CACCCAAGCA TGGCAAACAT CCTATGAAGG TGACAGGGTT TTGCAAACTC AGTTGATGGA GCACCTTGAG TACGCACTGC AACATACCGA CCTTCAAGCG ATGCGAGACG ATGGGGCTGT GGAAGCGGAA AATAAGTTAC GACCCTATGA CCGCTTGATA GCAAAAACTC AAAGAGAATT AAGCAGTCTA CCCATAGAGC AGCGGGTTTA TCGCCAGCTT AAGCAATCAG CCTCTTCACA ACTGGGTAGT GCACTCGACC TTAAGGTTGC AACAGGTCCC GCTTACGAGT TGGTGTTTGA GCAAAGAGTG AGTGATGAAA ATGCGCCAAA TGCGATGAAG ATCCCTCGTT TATTGAGTAA ACAAGGTTTC GAGCGTTACT TTATCCCGCA GTCTGATTCC ATTGCCGATC TGGCCTTGAT TGATAGCTGG GTACTTGGTC AATCTGAGTC AACGGATTTT AGTGATGCAG ATAAGATAAG TTTGCGTAAT AAGATCATTA ACCAATACAC GTTAGATTAT CAGTCATCTT GGCGAAAGGC GCTAAACGAC TTTGAATTAA AGGATTTTAC AGACATTAAT CACGGGGTAT TAGTGATTGA TAATTTTGCC ATTAGCAATC GTCCTGTGAA TCGCATTTTA GACAATTTGA CCAGAAATAC TGAGCTATTC CCATCGATGC CAGATGATGC CAGTGCTATG GCGGAGATTA TTGAGACGCC TCAATATCAG ATAGCGGCCA AGATTGATGG TGATTTTACA GATTTAAACC AACTGACTAA GACTGATGGA ACTCAACCTG TCTATTTGGA TGAGGTGATG GAGTCTGTCG TGCGTTTACA TGCTTATCTT AAGTCTATTC AAGATGCCCC CGATGTTGGT AAAGCGGCGC TTAAAGCGGC TCAGGAGCGT CTGACACTTA ATGATGCCGA TCCTATTTAT GCGCTGGAAA GGATCTCAAC CAGTTTGCCA AAACCTATGG ATACCATGGT TGGCAAACTA GCAAGTGAAA GCTGGAAAGT GGTACTACAA AGTGCCATTA AGCACTTAGA GGTGCGTTGG TATAACGAGG TGTATCAGGA TTATCAACAA AACCTAGCTT CGCGTTATCC GTTTAATCCC GCATCGACAA AGCAGGTATC TATCGATGAC TTTCAAAGCT TTTTTGGTCC CGAAGGCACG TTAAGTCGTT TTTATAACGA TCAGATGAAG ATGTTTCTTG AAGAGAACTT TGATGCACTA AACCAATTTA GTAAAGGAGA TTCCAATCTA GTACGCCGCG AGGTACTTCA ATCGCTTAAG CAGGCACAAC AGATCCAGAA AGCCTTCTTT AATCCGAAAG GAAACTTGGA TGTGGAGTTC TCGTTAGAGG CGCTGCAGAT GAGTCCAAAT AAACGTCGAA GTGTGATGAA TATTGATGGT CAGTATGTGG AGTACACTCA TGGCCCTAAA CGAGGTATCG ATCTGGTGTG GCCAAATACG TTACGTGACT CTACAGTCAG TAAATTAACC TTGGTGCCAA GTGAGTCAAA TGCGTCACCA CGCTCGATTG TGTTCGAAGG GCCTTGGGCA TTTTTCCGCT TATTAGATAG TGCAAGAATG TCCGGTAGTA GTTCAACCAG TATCGATTAC CAGTTCGAAG TCGATAAAGG TGATGTCACC TACCGCCTAC GTACGCGAGA TAATGTGAAT CCATTTACCA GCAAACTACT GAGTAGTTTT GAGATCCCAA AAACCTTGTA TTAA
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Protein sequence | MWSKLKSFFI KLLPELKSAL PILLVAIFVL INVGIWWAGP WLVIDESKPL SSVNSRLIAT VIFSLSCFTI WGWFQWRKLK QYNVDNEKSQ QLKDDPIIGM VERQEVELND VMLGLKESLN TRNYLYALPW YLVLGVENAG KTSLINRSGQ KFVFSSVMRA SGKKTENPYS FDWWISDDAV LIDPDGELLT QRTEEGSNNG EMSKRLWMHF VEWLDKTRSR RPLNGVVLAL DMANMVSAPT SDRKAYAHLM RARLRELMET LSTRLPVYIT LTKLDLLLGF EPFFRHYNQA ERDEIMGFTF SLNSVNDLDS WLEEFNEDYT DFISRINAHL PRALLQCRDK EERAAIYSFV RQVAGAHQVL QEFFADALAS DQFSTSALVR GVYFTSVYQQ GVPTNAYVDS ASRRYGLRES INSAQKSDNS TPYFIHTLFQ KIIYPEAGLA SDNFKVAKQK RRLMLLSFVA CSIASVLLVG TWHRYYLQNS QQADAVLDKV TEFNELNDQT SFDQLGKSII PPLNTIRTAT LEFGFFREKP KLISDFGLYQ GHTIGPKVEE TYLKLLSYRY LPALLKQVAT DMSDAPTNSN EKLAMLRVFR MMVDKSGRHD DFVKAYFTQA WQTSYEGDRV LQTQLMEHLE YALQHTDLQA MRDDGAVEAE NKLRPYDRLI AKTQRELSSL PIEQRVYRQL KQSASSQLGS ALDLKVATGP AYELVFEQRV SDENAPNAMK IPRLLSKQGF ERYFIPQSDS IADLALIDSW VLGQSESTDF SDADKISLRN KIINQYTLDY QSSWRKALND FELKDFTDIN HGVLVIDNFA ISNRPVNRIL DNLTRNTELF PSMPDDASAM AEIIETPQYQ IAAKIDGDFT DLNQLTKTDG TQPVYLDEVM ESVVRLHAYL KSIQDAPDVG KAALKAAQER LTLNDADPIY ALERISTSLP KPMDTMVGKL ASESWKVVLQ SAIKHLEVRW YNEVYQDYQQ NLASRYPFNP ASTKQVSIDD FQSFFGPEGT LSRFYNDQMK MFLEENFDAL NQFSKGDSNL VRREVLQSLK QAQQIQKAFF NPKGNLDVEF SLEALQMSPN KRRSVMNIDG QYVEYTHGPK RGIDLVWPNT LRDSTVSKLT LVPSESNASP RSIVFEGPWA FFRLLDSARM SGSSSTSIDY QFEVDKGDVT YRLRTRDNVN PFTSKLLSSF EIPKTLY
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